Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 RPS2P52-201ENST00000469610 820 ntBASIC21.4■■□□□ 1.02
KRT39Q6A163 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.4■■□□□ 1.02
KRT39Q6A163 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
KRT39Q6A163 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
KRT39Q6A163 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
KRT39Q6A163 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
KRT39Q6A163 AC124283.5-201ENST00000624661 1809 ntBASIC21.39■■□□□ 1.02
KRT39Q6A163 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
KRT39Q6A163 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.39■■□□□ 1.02
KRT39Q6A163 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
KRT39Q6A163 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.39■■□□□ 1.01
KRT39Q6A163 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT39Q6A163 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
KRT39Q6A163 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT39Q6A163 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
KRT39Q6A163 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.39■■□□□ 1.01
KRT39Q6A163 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT39Q6A163 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT39Q6A163 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT39Q6A163 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 UNC93B5-201ENST00000530315 699 ntBASIC21.39■■□□□ 1.01
KRT39Q6A163 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
KRT39Q6A163 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.39■■□□□ 1.01
KRT39Q6A163 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
KRT39Q6A163 AC120498.8-201ENST00000614275 531 ntBASIC21.39■■□□□ 1.01
KRT39Q6A163 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT39Q6A163 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT39Q6A163 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT39Q6A163 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT39Q6A163 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT39Q6A163 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.39■■□□□ 1.01
KRT39Q6A163 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT39Q6A163 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT39Q6A163 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT39Q6A163 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT39Q6A163 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT39Q6A163 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT39Q6A163 UNC93B4-201ENST00000505679 747 ntBASIC21.38■■□□□ 1.01
KRT39Q6A163 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.38■■□□□ 1.01
KRT39Q6A163 KRT18P6-201ENST00000555540 1265 ntBASIC21.38■■□□□ 1.01
KRT39Q6A163 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.38■■□□□ 1.01
KRT39Q6A163 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT39Q6A163 AC008687.6-201ENST00000596318 630 ntBASIC21.38■■□□□ 1.01
KRT39Q6A163 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.38■■□□□ 1.01
KRT39Q6A163 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
KRT39Q6A163 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.38■■□□□ 1.01
KRT39Q6A163 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT39Q6A163 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT39Q6A163 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT39Q6A163 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.38■■□□□ 1.01
KRT39Q6A163 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT39Q6A163 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT39Q6A163 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
KRT39Q6A163 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
KRT39Q6A163 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT39Q6A163 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT39Q6A163 RNA5SP413-201ENST00000516373 109 ntBASIC21.37■■□□□ 1.01
KRT39Q6A163 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.37■■□□□ 1.01
KRT39Q6A163 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.37■■□□□ 1.01
KRT39Q6A163 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.37■■□□□ 1.01
KRT39Q6A163 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.37■■□□□ 1.01
KRT39Q6A163 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.37■■□□□ 1.01
KRT39Q6A163 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.37■■□□□ 1.01
KRT39Q6A163 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT39Q6A163 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
KRT39Q6A163 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.37■■□□□ 1.01
KRT39Q6A163 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.37■■□□□ 1.01
KRT39Q6A163 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.37■■□□□ 1.01
KRT39Q6A163 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT39Q6A163 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
KRT39Q6A163 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
KRT39Q6A163 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
KRT39Q6A163 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.36■■□□□ 1.01
KRT39Q6A163 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.36■■□□□ 1.01
KRT39Q6A163 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
KRT39Q6A163 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.36■■□□□ 1.01
KRT39Q6A163 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
KRT39Q6A163 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
KRT39Q6A163 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.36■■□□□ 1.01
KRT39Q6A163 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.36■■□□□ 1.01
KRT39Q6A163 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.36■■□□□ 1.01
KRT39Q6A163 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
KRT39Q6A163 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
KRT39Q6A163 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.36■■□□□ 1.01
KRT39Q6A163 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
KRT39Q6A163 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
KRT39Q6A163 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
KRT39Q6A163 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.36■■□□□ 1.01
KRT39Q6A163 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.36■■□□□ 1.01
KRT39Q6A163 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms