Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LIM2P55344 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.8■□□□□ 0.6
LIM2P55344 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
LIM2P55344 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.8■□□□□ 0.6
LIM2P55344 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
LIM2P55344 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LIM2P55344 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.8■□□□□ 0.6
LIM2P55344 AC008687.6-201ENST00000596318 630 ntBASIC18.8■□□□□ 0.6
LIM2P55344 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.8■□□□□ 0.6
LIM2P55344 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.8■□□□□ 0.6
LIM2P55344 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.8■□□□□ 0.6
LIM2P55344 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIM2P55344 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.79■□□□□ 0.6
LIM2P55344 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIM2P55344 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.79■□□□□ 0.6
LIM2P55344 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.79■□□□□ 0.6
LIM2P55344 AP003097.1-201ENST00000530657 1135 ntBASIC18.79■□□□□ 0.6
LIM2P55344 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.79■□□□□ 0.6
LIM2P55344 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.79■□□□□ 0.6
LIM2P55344 AC008403.3-201ENST00000598924 454 ntBASIC18.79■□□□□ 0.6
LIM2P55344 AC120498.8-201ENST00000614275 531 ntBASIC18.79■□□□□ 0.6
LIM2P55344 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.79■□□□□ 0.6
LIM2P55344 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.79■□□□□ 0.6
LIM2P55344 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.79■□□□□ 0.6
LIM2P55344 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIM2P55344 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LIM2P55344 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.78■□□□□ 0.6
LIM2P55344 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.78■□□□□ 0.6
LIM2P55344 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.78■□□□□ 0.6
LIM2P55344 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.78■□□□□ 0.6
LIM2P55344 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.78■□□□□ 0.6
LIM2P55344 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.78■□□□□ 0.6
LIM2P55344 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.78■□□□□ 0.6
LIM2P55344 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.78■□□□□ 0.6
LIM2P55344 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 AC124283.5-201ENST00000624661 1809 ntBASIC18.78■□□□□ 0.6
LIM2P55344 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.78■□□□□ 0.6
LIM2P55344 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIM2P55344 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.78■□□□□ 0.6
LIM2P55344 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.77■□□□□ 0.6
LIM2P55344 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LIM2P55344 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.77■□□□□ 0.6
LIM2P55344 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.77■□□□□ 0.6
LIM2P55344 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LIM2P55344 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.77■□□□□ 0.6
LIM2P55344 RPS2P52-201ENST00000469610 820 ntBASIC18.77■□□□□ 0.6
LIM2P55344 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
LIM2P55344 AC026366.1-201ENST00000488803 879 ntBASIC18.77■□□□□ 0.6
LIM2P55344 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.77■□□□□ 0.6
LIM2P55344 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIM2P55344 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.77■□□□□ 0.6
LIM2P55344 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.77■□□□□ 0.6
LIM2P55344 MIR4651-201ENST00000582622 73 ntBASIC18.77■□□□□ 0.6
LIM2P55344 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.77■□□□□ 0.6
LIM2P55344 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.77■□□□□ 0.6
LIM2P55344 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms