Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
EPHB3P54753 C1QL1P1-201ENST00000568105 661 ntBASIC20.74■□□□□ 0.91
EPHB3P54753 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.74■□□□□ 0.91
EPHB3P54753 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.74■□□□□ 0.91
EPHB3P54753 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
EPHB3P54753 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
EPHB3P54753 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.74■□□□□ 0.91
EPHB3P54753 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
EPHB3P54753 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.73■□□□□ 0.91
EPHB3P54753 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.73■□□□□ 0.91
EPHB3P54753 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.73■□□□□ 0.91
EPHB3P54753 KRT18P21-201ENST00000515767 1272 ntBASIC20.73■□□□□ 0.91
EPHB3P54753 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
EPHB3P54753 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.73■□□□□ 0.91
EPHB3P54753 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
EPHB3P54753 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.73■□□□□ 0.91
EPHB3P54753 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.73■□□□□ 0.91
EPHB3P54753 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
EPHB3P54753 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
EPHB3P54753 SMG8-203ENST00000578922 2178 ntBASIC20.73■□□□□ 0.91
EPHB3P54753 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
EPHB3P54753 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
EPHB3P54753 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.72■□□□□ 0.91
EPHB3P54753 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.72■□□□□ 0.91
EPHB3P54753 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.72■□□□□ 0.91
EPHB3P54753 TUBB8P6-201ENST00000436895 1288 ntBASIC20.72■□□□□ 0.91
EPHB3P54753 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.72■□□□□ 0.91
EPHB3P54753 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 AC012306.2-201ENST00000609350 630 ntBASIC20.72■□□□□ 0.91
EPHB3P54753 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.72■□□□□ 0.91
EPHB3P54753 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
EPHB3P54753 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
EPHB3P54753 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.71■□□□□ 0.91
EPHB3P54753 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.71■□□□□ 0.91
EPHB3P54753 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
EPHB3P54753 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.71■□□□□ 0.91
EPHB3P54753 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.71■□□□□ 0.91
EPHB3P54753 AC116562.2-201ENST00000507042 360 ntBASIC20.71■□□□□ 0.91
EPHB3P54753 KRT18P16-201ENST00000510337 1294 ntBASIC20.71■□□□□ 0.91
EPHB3P54753 AL031985.4-201ENST00000642138 673 ntBASIC20.71■□□□□ 0.91
EPHB3P54753 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.71■□□□□ 0.91
EPHB3P54753 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
EPHB3P54753 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
EPHB3P54753 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
EPHB3P54753 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.71■□□□□ 0.91
EPHB3P54753 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
EPHB3P54753 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.7■□□□□ 0.91
EPHB3P54753 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 AC079598.2-202ENST00000546624 1451 ntBASIC20.7■□□□□ 0.9
EPHB3P54753 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.7■□□□□ 0.9
EPHB3P54753 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.7■□□□□ 0.9
EPHB3P54753 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 AP000525.1-201ENST00000608286 694 ntBASIC20.7■□□□□ 0.9
EPHB3P54753 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
EPHB3P54753 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.7■□□□□ 0.9
EPHB3P54753 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
EPHB3P54753 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
EPHB3P54753 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.69■□□□□ 0.9
EPHB3P54753 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.69■□□□□ 0.9
EPHB3P54753 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.69■□□□□ 0.9
EPHB3P54753 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.69■□□□□ 0.9
EPHB3P54753 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.69■□□□□ 0.9
EPHB3P54753 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.69■□□□□ 0.9
EPHB3P54753 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
EPHB3P54753 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.69■□□□□ 0.9
EPHB3P54753 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.69■□□□□ 0.9
EPHB3P54753 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.69■□□□□ 0.9
EPHB3P54753 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.69■□□□□ 0.9
EPHB3P54753 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms