Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MIR4758-201ENST00000577688 71 ntBASIC18.57■□□□□ 0.56
RFX3P48380 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
RFX3P48380 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RFX3P48380 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
RFX3P48380 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.57■□□□□ 0.56
RFX3P48380 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX3P48380 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RFX3P48380 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX3P48380 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.56■□□□□ 0.56
RFX3P48380 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.56■□□□□ 0.56
RFX3P48380 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX3P48380 AC098934.4-201ENST00000564127 592 ntBASIC18.56■□□□□ 0.56
RFX3P48380 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.56■□□□□ 0.56
RFX3P48380 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.56■□□□□ 0.56
RFX3P48380 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
RFX3P48380 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX3P48380 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.56■□□□□ 0.56
RFX3P48380 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RFX3P48380 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RFX3P48380 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.56■□□□□ 0.56
RFX3P48380 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 AC020763.4-201ENST00000623414 4170 ntBASIC18.56■□□□□ 0.56
RFX3P48380 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RFX3P48380 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
RFX3P48380 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX3P48380 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX3P48380 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX3P48380 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
RFX3P48380 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
RFX3P48380 AC092118.2-201ENST00000613495 667 ntBASIC18.55■□□□□ 0.56
RFX3P48380 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.55■□□□□ 0.56
RFX3P48380 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.55■□□□□ 0.56
RFX3P48380 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.55■□□□□ 0.56
RFX3P48380 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
RFX3P48380 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFX3P48380 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
RFX3P48380 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX3P48380 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
RFX3P48380 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
RFX3P48380 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX3P48380 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFX3P48380 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.54■□□□□ 0.56
RFX3P48380 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.54■□□□□ 0.56
RFX3P48380 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
RFX3P48380 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.54■□□□□ 0.56
RFX3P48380 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.54■□□□□ 0.56
RFX3P48380 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
RFX3P48380 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.54■□□□□ 0.56
RFX3P48380 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.54■□□□□ 0.56
RFX3P48380 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
RFX3P48380 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.54■□□□□ 0.56
RFX3P48380 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.54■□□□□ 0.56
RFX3P48380 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFX3P48380 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.54■□□□□ 0.56
RFX3P48380 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.54■□□□□ 0.56
RFX3P48380 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.54■□□□□ 0.56
RFX3P48380 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
RFX3P48380 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFX3P48380 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RFX3P48380 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
RFX3P48380 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RFX3P48380 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFX3P48380 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
RFX3P48380 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFX3P48380 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFX3P48380 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFX3P48380 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
RFX3P48380 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RFX3P48380 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.53■□□□□ 0.56
RFX3P48380 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms