Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.83■□□□□ 0.77
PTPN4P29074 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN4P29074 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN4P29074 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN4P29074 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.83■□□□□ 0.76
PTPN4P29074 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.83■□□□□ 0.76
PTPN4P29074 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.83■□□□□ 0.76
PTPN4P29074 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.83■□□□□ 0.76
PTPN4P29074 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
PTPN4P29074 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN4P29074 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN4P29074 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
PTPN4P29074 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.76
PTPN4P29074 AC011484.1-201ENST00000377652 1995 ntBASIC19.83■□□□□ 0.76
PTPN4P29074 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 MKRN4P-201ENST00000444706 1521 ntBASIC19.82■□□□□ 0.76
PTPN4P29074 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
PTPN4P29074 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
PTPN4P29074 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
PTPN4P29074 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 AC093503.3-201ENST00000624917 2352 ntBASIC19.82■□□□□ 0.76
PTPN4P29074 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.82■□□□□ 0.76
PTPN4P29074 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
PTPN4P29074 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.82■□□□□ 0.76
PTPN4P29074 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PTPN4P29074 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN4P29074 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN4P29074 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN4P29074 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN4P29074 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
PTPN4P29074 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN4P29074 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN4P29074 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.82■□□□□ 0.76
PTPN4P29074 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
PTPN4P29074 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.81■□□□□ 0.76
PTPN4P29074 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
PTPN4P29074 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
PTPN4P29074 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.81■□□□□ 0.76
PTPN4P29074 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.81■□□□□ 0.76
PTPN4P29074 AC098934.4-201ENST00000564127 592 ntBASIC19.81■□□□□ 0.76
PTPN4P29074 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.81■□□□□ 0.76
PTPN4P29074 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.81■□□□□ 0.76
PTPN4P29074 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.81■□□□□ 0.76
PTPN4P29074 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PTPN4P29074 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.81■□□□□ 0.76
PTPN4P29074 KRT16P2-201ENST00000414673 1423 ntBASIC19.81■□□□□ 0.76
PTPN4P29074 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.81■□□□□ 0.76
PTPN4P29074 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN4P29074 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.81■□□□□ 0.76
PTPN4P29074 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PTPN4P29074 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
PTPN4P29074 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.8■□□□□ 0.76
PTPN4P29074 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PTPN4P29074 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.8■□□□□ 0.76
PTPN4P29074 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.8■□□□□ 0.76
PTPN4P29074 MIPEPP3-201ENST00000412105 444 ntBASIC19.8■□□□□ 0.76
PTPN4P29074 AL512625.2-201ENST00000417533 625 ntBASIC19.8■□□□□ 0.76
PTPN4P29074 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.8■□□□□ 0.76
PTPN4P29074 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.8■□□□□ 0.76
PTPN4P29074 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.8■□□□□ 0.76
PTPN4P29074 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.8■□□□□ 0.76
PTPN4P29074 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN4P29074 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.8■□□□□ 0.76
PTPN4P29074 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PTPN4P29074 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PTPN4P29074 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN4P29074 AC093484.2-201ENST00000580996 2166 ntBASIC19.79■□□□□ 0.76
PTPN4P29074 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.79■□□□□ 0.76
PTPN4P29074 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN4P29074 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms