Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.47■□□□□ 0.87
COL9A1P20849 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL9A1P20849 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL9A1P20849 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL9A1P20849 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL9A1P20849 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.46■□□□□ 0.87
COL9A1P20849 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL9A1P20849 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL9A1P20849 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.46■□□□□ 0.87
COL9A1P20849 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.46■□□□□ 0.87
COL9A1P20849 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL9A1P20849 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.46■□□□□ 0.87
COL9A1P20849 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.46■□□□□ 0.87
COL9A1P20849 AC244015.2-201ENST00000616358 1861 ntBASIC20.45■□□□□ 0.86
COL9A1P20849 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.45■□□□□ 0.86
COL9A1P20849 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 HOMER2P1-201ENST00000455653 964 ntBASIC20.45■□□□□ 0.86
COL9A1P20849 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.45■□□□□ 0.86
COL9A1P20849 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
COL9A1P20849 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 VENTXP5-201ENST00000523979 775 ntBASIC20.45■□□□□ 0.86
COL9A1P20849 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.45■□□□□ 0.86
COL9A1P20849 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.45■□□□□ 0.86
COL9A1P20849 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.45■□□□□ 0.86
COL9A1P20849 AC011558.1-201ENST00000623459 338 ntBASIC20.45■□□□□ 0.86
COL9A1P20849 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.45■□□□□ 0.86
COL9A1P20849 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL9A1P20849 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL9A1P20849 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
COL9A1P20849 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL9A1P20849 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.44■□□□□ 0.86
COL9A1P20849 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL9A1P20849 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL9A1P20849 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL9A1P20849 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.44■□□□□ 0.86
COL9A1P20849 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.44■□□□□ 0.86
COL9A1P20849 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.44■□□□□ 0.86
COL9A1P20849 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL9A1P20849 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL9A1P20849 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.44■□□□□ 0.86
COL9A1P20849 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.44■□□□□ 0.86
COL9A1P20849 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL9A1P20849 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.43■□□□□ 0.86
COL9A1P20849 AL359075.1-203ENST00000462729 1002 ntBASIC20.43■□□□□ 0.86
COL9A1P20849 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL9A1P20849 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.43■□□□□ 0.86
COL9A1P20849 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.43■□□□□ 0.86
COL9A1P20849 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.43■□□□□ 0.86
COL9A1P20849 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
COL9A1P20849 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.43■□□□□ 0.86
COL9A1P20849 AL121829.2-201ENST00000620908 328 ntBASIC20.43■□□□□ 0.86
COL9A1P20849 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL9A1P20849 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.43■□□□□ 0.86
COL9A1P20849 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
COL9A1P20849 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL9A1P20849 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL9A1P20849 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.42■□□□□ 0.86
COL9A1P20849 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL9A1P20849 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.42■□□□□ 0.86
COL9A1P20849 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL9A1P20849 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.42■□□□□ 0.86
COL9A1P20849 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.42■□□□□ 0.86
COL9A1P20849 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.42■□□□□ 0.86
COL9A1P20849 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.42■□□□□ 0.86
COL9A1P20849 AP005242.2-201ENST00000580065 1175 ntBASIC20.42■□□□□ 0.86
COL9A1P20849 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.42■□□□□ 0.86
COL9A1P20849 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL9A1P20849 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.42■□□□□ 0.86
COL9A1P20849 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL9A1P20849 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.42■□□□□ 0.86
COL9A1P20849 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.42■□□□□ 0.86
COL9A1P20849 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.42■□□□□ 0.86
COL9A1P20849 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL9A1P20849 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.42■□□□□ 0.86
COL9A1P20849 Z98882.1-201ENST00000622160 2253 ntBASIC20.42■□□□□ 0.86
COL9A1P20849 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL9A1P20849 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL9A1P20849 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL9A1P20849 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL9A1P20849 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL9A1P20849 KSR1P1-201ENST00000446298 240 ntBASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms