Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
COL6A3P12111 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL6A3P12111 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL6A3P12111 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL6A3P12111 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.83■□□□□ 0.92
COL6A3P12111 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL6A3P12111 KRT18P31-201ENST00000506277 1292 ntBASIC20.83■□□□□ 0.92
COL6A3P12111 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL6A3P12111 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.92
COL6A3P12111 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.82■□□□□ 0.92
COL6A3P12111 AC142381.3-201ENST00000568208 1670 ntBASIC20.82■□□□□ 0.92
COL6A3P12111 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.82■□□□□ 0.92
COL6A3P12111 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
COL6A3P12111 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 AC004980.1-204ENST00000429707 299 ntBASIC20.82■□□□□ 0.92
COL6A3P12111 NUS1P1-201ENST00000446295 882 ntBASIC20.82■□□□□ 0.92
COL6A3P12111 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL6A3P12111 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 AC016734.2-201ENST00000624325 1377 ntBASIC20.82■□□□□ 0.92
COL6A3P12111 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.82■□□□□ 0.92
COL6A3P12111 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL6A3P12111 BX119927.1-201ENST00000636596 1552 ntBASIC20.82■□□□□ 0.92
COL6A3P12111 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A3P12111 AC005104.2-201ENST00000427818 678 ntBASIC20.81■□□□□ 0.92
COL6A3P12111 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.81■□□□□ 0.92
COL6A3P12111 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
COL6A3P12111 AL353719.1-201ENST00000566847 864 ntBASIC20.81■□□□□ 0.92
COL6A3P12111 C1QL1P1-201ENST00000568105 661 ntBASIC20.81■□□□□ 0.92
COL6A3P12111 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
COL6A3P12111 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A3P12111 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A3P12111 AC140113.2-201ENST00000604370 208 ntBASIC20.81■□□□□ 0.92
COL6A3P12111 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.81■□□□□ 0.92
COL6A3P12111 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A3P12111 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.81■□□□□ 0.92
COL6A3P12111 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A3P12111 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A3P12111 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A3P12111 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL6A3P12111 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.81■□□□□ 0.92
COL6A3P12111 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.81■□□□□ 0.92
COL6A3P12111 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
COL6A3P12111 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL6A3P12111 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL6A3P12111 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL6A3P12111 STARP1-201ENST00000397973 869 ntBASIC20.8■□□□□ 0.92
COL6A3P12111 KRT16P4-201ENST00000453883 522 ntBASIC20.8■□□□□ 0.92
COL6A3P12111 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL6A3P12111 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
COL6A3P12111 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.8■□□□□ 0.92
COL6A3P12111 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL6A3P12111 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.8■□□□□ 0.92
COL6A3P12111 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL6A3P12111 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
COL6A3P12111 AL645929.1-201ENST00000420084 975 ntBASIC20.8■□□□□ 0.92
COL6A3P12111 AC244107.1-201ENST00000442033 332 ntBASIC20.8■□□□□ 0.92
COL6A3P12111 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.8■□□□□ 0.92
COL6A3P12111 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.8■□□□□ 0.92
COL6A3P12111 GCSHP2-201ENST00000560971 527 ntBASIC20.8■□□□□ 0.92
COL6A3P12111 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.8■□□□□ 0.92
COL6A3P12111 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.8■□□□□ 0.92
COL6A3P12111 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.8■□□□□ 0.92
COL6A3P12111 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.8■□□□□ 0.92
COL6A3P12111 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A3P12111 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.79■□□□□ 0.92
COL6A3P12111 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.79■□□□□ 0.92
COL6A3P12111 HTR5BP-201ENST00000430851 1154 ntBASIC20.79■□□□□ 0.92
COL6A3P12111 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL6A3P12111 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.79■□□□□ 0.92
COL6A3P12111 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.79■□□□□ 0.92
COL6A3P12111 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.79■□□□□ 0.92
COL6A3P12111 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL6A3P12111 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
COL6A3P12111 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL6A3P12111 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.79■□□□□ 0.92
COL6A3P12111 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A3P12111 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A3P12111 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A3P12111 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.79■□□□□ 0.92
COL6A3P12111 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A3P12111 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.79■□□□□ 0.92
COL6A3P12111 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
COL6A3P12111 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
COL6A3P12111 AC020928.2-201ENST00000588717 2197 ntBASIC20.79■□□□□ 0.92
COL6A3P12111 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.79■□□□□ 0.92
COL6A3P12111 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A3P12111 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
COL6A3P12111 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A3P12111 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL6A3P12111 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.79■□□□□ 0.92
COL6A3P12111 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
COL6A3P12111 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.78■□□□□ 0.92
COL6A3P12111 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms