Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PCNAP12004 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCNAP12004 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.26■□□□□ 0.67
PCNAP12004 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PCNAP12004 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.26■□□□□ 0.67
PCNAP12004 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
PCNAP12004 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
PCNAP12004 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.25■□□□□ 0.67
PCNAP12004 KRT8P17-201ENST00000453110 1448 ntBASIC19.25■□□□□ 0.67
PCNAP12004 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PCNAP12004 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.25■□□□□ 0.67
PCNAP12004 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PCNAP12004 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.25■□□□□ 0.67
PCNAP12004 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.25■□□□□ 0.67
PCNAP12004 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
PCNAP12004 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
PCNAP12004 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.25■□□□□ 0.67
PCNAP12004 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.25■□□□□ 0.67
PCNAP12004 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.25■□□□□ 0.67
PCNAP12004 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 AL691432.2-201ENST00000607222 2038 ntBASIC19.25■□□□□ 0.67
PCNAP12004 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCNAP12004 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.24■□□□□ 0.67
PCNAP12004 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCNAP12004 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PCNAP12004 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PCNAP12004 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
PCNAP12004 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.24■□□□□ 0.67
PCNAP12004 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.24■□□□□ 0.67
PCNAP12004 AL031963.3-201ENST00000606441 850 ntBASIC19.24■□□□□ 0.67
PCNAP12004 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCNAP12004 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.24■□□□□ 0.67
PCNAP12004 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCNAP12004 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PCNAP12004 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
PCNAP12004 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCNAP12004 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCNAP12004 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCNAP12004 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
PCNAP12004 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.24■□□□□ 0.67
PCNAP12004 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.24■□□□□ 0.67
PCNAP12004 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCNAP12004 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PCNAP12004 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.23■□□□□ 0.67
PCNAP12004 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
PCNAP12004 SLC29A4P1-201ENST00000398760 971 ntBASIC19.23■□□□□ 0.67
PCNAP12004 MIPEPP3-201ENST00000412105 444 ntBASIC19.23■□□□□ 0.67
PCNAP12004 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
PCNAP12004 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.23■□□□□ 0.67
PCNAP12004 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 KRT8P20-201ENST00000423953 1409 ntBASIC19.23■□□□□ 0.67
PCNAP12004 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.23■□□□□ 0.67
PCNAP12004 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCNAP12004 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.23■□□□□ 0.67
PCNAP12004 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.22■□□□□ 0.67
PCNAP12004 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCNAP12004 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCNAP12004 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.22■□□□□ 0.67
PCNAP12004 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCNAP12004 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCNAP12004 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
PCNAP12004 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCNAP12004 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PCNAP12004 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCNAP12004 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.22■□□□□ 0.67
PCNAP12004 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.22■□□□□ 0.67
PCNAP12004 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.22■□□□□ 0.67
PCNAP12004 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCNAP12004 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.22■□□□□ 0.67
PCNAP12004 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.21■□□□□ 0.67
PCNAP12004 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.21■□□□□ 0.67
PCNAP12004 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PCNAP12004 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms