Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 MIR638-201ENST00000385237 100 ntBASIC16.43■□□□□ 0.22
CTSDP07339 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC16.43■□□□□ 0.22
CTSDP07339 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.43■□□□□ 0.22
CTSDP07339 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC16.43■□□□□ 0.22
CTSDP07339 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.43■□□□□ 0.22
CTSDP07339 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC16.43■□□□□ 0.22
CTSDP07339 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.43■□□□□ 0.22
CTSDP07339 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
CTSDP07339 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CTSDP07339 AP001271.2-201ENST00000624018 1556 ntBASIC16.43■□□□□ 0.22
CTSDP07339 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.42■□□□□ 0.22
CTSDP07339 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.42■□□□□ 0.22
CTSDP07339 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
CTSDP07339 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CTSDP07339 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CTSDP07339 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC16.42■□□□□ 0.22
CTSDP07339 SUDS3P1-201ENST00000505831 966 ntBASIC16.42■□□□□ 0.22
CTSDP07339 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC16.42■□□□□ 0.22
CTSDP07339 SLC7A5P1-201ENST00000568957 537 ntBASIC16.42■□□□□ 0.22
CTSDP07339 AL136967.2-201ENST00000623968 743 ntBASIC16.42■□□□□ 0.22
CTSDP07339 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 AC087633.2-202ENST00000565166 1439 ntBASIC16.42■□□□□ 0.22
CTSDP07339 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.42■□□□□ 0.22
CTSDP07339 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CTSDP07339 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.41■□□□□ 0.22
CTSDP07339 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CTSDP07339 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC16.41■□□□□ 0.22
CTSDP07339 MIR6084-201ENST00000622012 110 ntBASIC16.41■□□□□ 0.22
CTSDP07339 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.41■□□□□ 0.22
CTSDP07339 KRT16P6-202ENST00000425692 1426 ntBASIC16.41■□□□□ 0.22
CTSDP07339 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.41■□□□□ 0.22
CTSDP07339 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.41■□□□□ 0.22
CTSDP07339 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CTSDP07339 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
CTSDP07339 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.4■□□□□ 0.22
CTSDP07339 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
CTSDP07339 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.4■□□□□ 0.22
CTSDP07339 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 KRT8P17-201ENST00000453110 1448 ntBASIC16.4■□□□□ 0.22
CTSDP07339 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 NME4-202ENST00000382940 766 ntTSL 3 BASIC16.4■□□□□ 0.22
CTSDP07339 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC16.4■□□□□ 0.22
CTSDP07339 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC16.4■□□□□ 0.22
CTSDP07339 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC16.4■□□□□ 0.22
CTSDP07339 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CTSDP07339 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.4■□□□□ 0.22
CTSDP07339 NME4-211ENST00000620944 1193 ntTSL 2 BASIC16.4■□□□□ 0.22
CTSDP07339 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.4■□□□□ 0.22
CTSDP07339 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTSDP07339 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms