Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS4BO75351 AL158047.1-201ENST00000445918 881 ntBASIC19.38■□□□□ 0.69
VPS4BO75351 RPS2P4-201ENST00000476944 856 ntBASIC19.38■□□□□ 0.69
VPS4BO75351 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS4BO75351 RARRES2P4-201ENST00000514074 484 ntBASIC19.38■□□□□ 0.69
VPS4BO75351 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS4BO75351 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
VPS4BO75351 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS4BO75351 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4BO75351 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4BO75351 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4BO75351 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4BO75351 AC087633.2-202ENST00000565166 1439 ntBASIC19.37■□□□□ 0.69
VPS4BO75351 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4BO75351 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4BO75351 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS4BO75351 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4BO75351 GCSHP5-201ENST00000443090 522 ntBASIC19.37■□□□□ 0.69
VPS4BO75351 AC098590.1-201ENST00000468126 897 ntBASIC19.37■□□□□ 0.69
VPS4BO75351 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4BO75351 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4BO75351 AL356652.1-201ENST00000615962 565 ntBASIC19.37■□□□□ 0.69
VPS4BO75351 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS4BO75351 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS4BO75351 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4BO75351 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
VPS4BO75351 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4BO75351 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
VPS4BO75351 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VPS4BO75351 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4BO75351 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS4BO75351 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.36■□□□□ 0.69
VPS4BO75351 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
VPS4BO75351 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS4BO75351 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS4BO75351 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
VPS4BO75351 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
VPS4BO75351 ESRRAP1-201ENST00000400596 1257 ntBASIC19.36■□□□□ 0.69
VPS4BO75351 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
VPS4BO75351 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
VPS4BO75351 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
VPS4BO75351 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS4BO75351 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
VPS4BO75351 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS4BO75351 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS4BO75351 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VPS4BO75351 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS4BO75351 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS4BO75351 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 TERF1P5-201ENST00000477545 1207 ntBASIC19.35■□□□□ 0.69
VPS4BO75351 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS4BO75351 AC142381.4-202ENST00000563973 229 ntBASIC19.35■□□□□ 0.69
VPS4BO75351 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS4BO75351 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 AC069236.1-201ENST00000604339 616 ntBASIC19.35■□□□□ 0.69
VPS4BO75351 AC092118.2-201ENST00000613495 667 ntBASIC19.35■□□□□ 0.69
VPS4BO75351 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS4BO75351 OR10C1-204ENST00000622521 1039 ntBASIC19.35■□□□□ 0.69
VPS4BO75351 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
VPS4BO75351 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
VPS4BO75351 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS4BO75351 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS4BO75351 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS4BO75351 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS4BO75351 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VPS4BO75351 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
VPS4BO75351 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS4BO75351 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
VPS4BO75351 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS4BO75351 CYP2T1P-201ENST00000432607 1285 ntBASIC19.34■□□□□ 0.69
VPS4BO75351 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
VPS4BO75351 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS4BO75351 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS4BO75351 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.34■□□□□ 0.69
VPS4BO75351 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS4BO75351 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS4BO75351 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms