Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
LMX1BO60663 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.39■□□□□ 0.37
LMX1BO60663 AL591742.1-201ENST00000604433 565 ntBASIC17.39■□□□□ 0.37
LMX1BO60663 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LMX1BO60663 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.39■□□□□ 0.37
LMX1BO60663 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1BO60663 TMEM179-206ENST00000616017 1645 ntBASIC17.39■□□□□ 0.37
LMX1BO60663 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.39■□□□□ 0.37
LMX1BO60663 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.38■□□□□ 0.37
LMX1BO60663 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.38■□□□□ 0.37
LMX1BO60663 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
LMX1BO60663 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LMX1BO60663 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.38■□□□□ 0.37
LMX1BO60663 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.38■□□□□ 0.37
LMX1BO60663 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.38■□□□□ 0.37
LMX1BO60663 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.38■□□□□ 0.37
LMX1BO60663 AC083880.1-201ENST00000608266 535 ntBASIC17.38■□□□□ 0.37
LMX1BO60663 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.38■□□□□ 0.37
LMX1BO60663 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LMX1BO60663 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LMX1BO60663 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LMX1BO60663 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1BO60663 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
LMX1BO60663 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.37■□□□□ 0.37
LMX1BO60663 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.37■□□□□ 0.37
LMX1BO60663 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.37■□□□□ 0.37
LMX1BO60663 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.37■□□□□ 0.37
LMX1BO60663 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.37■□□□□ 0.37
LMX1BO60663 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.37■□□□□ 0.37
LMX1BO60663 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
LMX1BO60663 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
LMX1BO60663 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.37■□□□□ 0.37
LMX1BO60663 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
LMX1BO60663 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1BO60663 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
LMX1BO60663 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LMX1BO60663 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
LMX1BO60663 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.36■□□□□ 0.37
LMX1BO60663 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LMX1BO60663 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.36■□□□□ 0.37
LMX1BO60663 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.36■□□□□ 0.37
LMX1BO60663 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.36■□□□□ 0.37
LMX1BO60663 GCSHP5-201ENST00000443090 522 ntBASIC17.36■□□□□ 0.37
LMX1BO60663 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
LMX1BO60663 AC098590.1-201ENST00000468126 897 ntBASIC17.36■□□□□ 0.37
LMX1BO60663 AC091874.3-201ENST00000512672 1195 ntBASIC17.36■□□□□ 0.37
LMX1BO60663 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.36■□□□□ 0.37
LMX1BO60663 MYC-209ENST00000641252 345 ntBASIC17.36■□□□□ 0.37
LMX1BO60663 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.36■□□□□ 0.37
LMX1BO60663 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LMX1BO60663 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
LMX1BO60663 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LMX1BO60663 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1BO60663 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1BO60663 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.35■□□□□ 0.37
LMX1BO60663 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LMX1BO60663 AL158047.1-201ENST00000445918 881 ntBASIC17.35■□□□□ 0.37
LMX1BO60663 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.35■□□□□ 0.37
LMX1BO60663 AC142381.4-202ENST00000563973 229 ntBASIC17.35■□□□□ 0.37
LMX1BO60663 AC006058.3-201ENST00000606217 1069 ntBASIC17.35■□□□□ 0.37
LMX1BO60663 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.35■□□□□ 0.37
LMX1BO60663 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms