Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AL023803.3-201ENST00000615559 522 ntBASIC17.93■□□□□ 0.46
COL6A6A6NMZ7 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A6A6NMZ7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A6A6NMZ7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A6A6NMZ7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 MIR3180-1-201ENST00000580374 94 ntBASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 MIR3180-3-201ENST00000584616 94 ntBASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A6A6NMZ7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 AC092338.2-201ENST00000568827 1415 ntBASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 RCC2P6-201ENST00000526625 1557 ntBASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 MFAP1P1-201ENST00000442257 1255 ntBASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 TSPY17P-201ENST00000450329 467 ntBASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A6A6NMZ7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 PRSS44-201ENST00000515154 1146 ntBASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A6A6NMZ7 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 SLC25A1P2-201ENST00000430693 912 ntBASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 UNC93B7-201ENST00000509439 705 ntBASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
COL6A6A6NMZ7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms