Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 SNX3-202ENST00000349379 890 ntTSL 2 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 Z98044.1-201ENST00000632503 1764 ntBASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 PTPA-214ENST00000423100 988 ntTSL 2 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 AC011298.3-201ENST00000615796 283 ntBASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
TRAV1-1A0A0B4J248 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
TRAV1-1A0A0B4J248 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.46■□□□□ 0.06
TRAV1-1A0A0B4J248 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 AP001271.2-201ENST00000624018 1556 ntBASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 KRT16P2-201ENST00000414673 1423 ntBASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 SERBP1P1-201ENST00000396021 1160 ntBASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
TRAV1-1A0A0B4J248 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms