Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 AC025283.1-201ENST00000572039 734 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.7□□□□□ -1.34
PTPN9P43378 MIR3157-201ENST00000578688 85 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 AC011497.2-201ENST00000600255 639 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 AC073046.2-201ENST00000604756 527 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 AL138693.1-201ENST00000622219 129 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 RFC1-217ENST00000639695 867 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.69□□□□□ -1.34
PTPN9P43378 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.69□□□□□ -1.34
PTPN9P43378 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
PTPN9P43378 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.69□□□□□ -1.34
PTPN9P43378 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
PTPN9P43378 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC6.69□□□□□ -1.34
PTPN9P43378 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.69□□□□□ -1.34
PTPN9P43378 GPN3P1-201ENST00000423883 535 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 FAM204CP-201ENST00000424489 642 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 AL157884.1-201ENST00000424561 454 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 KATNBL1P2-201ENST00000433311 835 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 MRPS21P3-201ENST00000436696 262 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 RPEP4-201ENST00000437636 602 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 UBQLN1P1-207ENST00000441056 1169 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.69□□□□□ -1.34
PTPN9P43378 GBA3-201ENST00000503442 1232 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC6.69□□□□□ -1.34
PTPN9P43378 RNU6ATAC39P-201ENST00000516309 149 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.69□□□□□ -1.34
PTPN9P43378 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.69□□□□□ -1.34
PTPN9P43378 TPRX1P1-201ENST00000557620 319 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 AC037479.1-201ENST00000558361 625 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.69□□□□□ -1.34
PTPN9P43378 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.69□□□□□ -1.34
PTPN9P43378 GAPDHP41-201ENST00000613707 975 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 AL445649.1-201ENST00000615941 691 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
PTPN9P43378 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
PTPN9P43378 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.69□□□□□ -1.34
PTPN9P43378 CR383656.5-201ENST00000547616 1340 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 AC105749.1-201ENST00000631338 2008 ntBASIC6.69□□□□□ -1.34
PTPN9P43378 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
PTPN9P43378 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.69□□□□□ -1.34
PTPN9P43378 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
PTPN9P43378 MAPK10-287ENST00000641217 3037 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.68□□□□□ -1.34
PTPN9P43378 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
PTPN9P43378 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.68□□□□□ -1.34
PTPN9P43378 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 AL157831.2-201ENST00000564681 3095 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
PTPN9P43378 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.68□□□□□ -1.34
PTPN9P43378 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.68□□□□□ -1.34
PTPN9P43378 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.68□□□□□ -1.34
PTPN9P43378 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 MIR551B-201ENST00000384984 96 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC6.68□□□□□ -1.34
PTPN9P43378 RPL21P50-201ENST00000417698 477 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.68□□□□□ -1.34
PTPN9P43378 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.68□□□□□ -1.34
PTPN9P43378 AC064862.5-201ENST00000440618 334 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 AC009237.1-201ENST00000442127 744 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
PTPN9P43378 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC6.68□□□□□ -1.34
PTPN9P43378 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.68□□□□□ -1.34
PTPN9P43378 MTND2P31-201ENST00000512602 616 ntBASIC6.68□□□□□ -1.34
PTPN9P43378 AC025857.1-201ENST00000525252 377 ntBASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 191.5 ms