Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 MIR595-201ENST00000384905 96 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC007068.1-201ENST00000396690 844 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AL590004.1-201ENST00000405321 300 ntBASIC7.56□□□□□ -1.2
MSX1P28360 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
MSX1P28360 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 AC008496.2-201ENST00000421252 460 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 AP000997.1-201ENST00000424313 479 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 MTCO1P3-201ENST00000429327 192 ntBASIC7.56□□□□□ -1.2
MSX1P28360 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 AL035458.1-201ENST00000433096 585 ntBASIC7.56□□□□□ -1.2
MSX1P28360 MTND4LP10-201ENST00000435146 291 ntBASIC7.56□□□□□ -1.2
MSX1P28360 FDPSP8-201ENST00000438304 1089 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC092170.1-201ENST00000440211 356 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC7.56□□□□□ -1.2
MSX1P28360 AL353898.1-201ENST00000444055 238 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC7.56□□□□□ -1.2
MSX1P28360 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 RPS29P16-201ENST00000452798 171 ntBASIC7.56□□□□□ -1.2
MSX1P28360 RPSAP54-201ENST00000454001 886 ntBASIC7.56□□□□□ -1.2
MSX1P28360 EIF4A2P4-201ENST00000458691 1196 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC009022.1-201ENST00000472115 496 ntBASIC7.56□□□□□ -1.2
MSX1P28360 RPL17P37-201ENST00000490729 548 ntBASIC7.56□□□□□ -1.2
MSX1P28360 RPL7P24-201ENST00000493052 752 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 GAPDHP31-201ENST00000509325 1014 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 AC023794.3-204ENST00000510754 236 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 PTTG3P-201ENST00000521862 606 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC123788.1-201ENST00000526922 783 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 OR4C7P-201ENST00000533375 919 ntBASIC7.56□□□□□ -1.2
MSX1P28360 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
MSX1P28360 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
MSX1P28360 AC104046.1-201ENST00000559487 406 ntBASIC7.56□□□□□ -1.2
MSX1P28360 GS1-279B7.1-201ENST00000562817 399 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 SOD1P2-201ENST00000563903 451 ntBASIC7.56□□□□□ -1.2
MSX1P28360 LCMT1-AS1-202ENST00000563962 766 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 MIR3689C-201ENST00000581239 72 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC139085.1-201ENST00000582716 182 ntBASIC7.56□□□□□ -1.2
MSX1P28360 CD209-208ENST00000593821 807 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 OR7A8P-201ENST00000595427 913 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC005261.5-201ENST00000596280 355 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AL078623.1-201ENST00000602702 907 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC020910.2-201ENST00000603635 610 ntBASIC7.56□□□□□ -1.2
MSX1P28360 SEPT7P9-203ENST00000604116 343 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AL121917.2-201ENST00000605044 390 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC012557.1-201ENST00000607115 611 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC008536.2-201ENST00000607284 349 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 AC015922.4-201ENST00000612568 690 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC091834.1-201ENST00000614543 472 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 MAGEB3-202ENST00000620842 1129 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
MSX1P28360 AC138649.3-201ENST00000622154 254 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 LINC01002-216ENST00000632351 572 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.56□□□□□ -1.2
MSX1P28360 CDC42SE2-208ENST00000505065 4352 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 NAT10-210ENST00000615292 3329 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 EPS15P1-202ENST00000459691 2071 ntBASIC7.56□□□□□ -1.2
MSX1P28360 GON4L-219ENST00000622608 4801 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 ZNF192P2-201ENST00000402215 1383 ntBASIC7.56□□□□□ -1.2
MSX1P28360 ITIH3-202ENST00000449956 3007 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC7.56□□□□□ -1.2
MSX1P28360 AC020978.8-201ENST00000571975 3022 ntBASIC7.56□□□□□ -1.2
MSX1P28360 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC7.56□□□□□ -1.2
MSX1P28360 AC105046.1-201ENST00000566457 4997 ntBASIC7.56□□□□□ -1.2
MSX1P28360 MMP13-202ENST00000340273 1470 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 AL391261.1-201ENST00000555712 1479 ntBASIC7.55□□□□□ -1.2
MSX1P28360 MAP3K7CL-203ENST00000341618 1855 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 NR2F1-AS1-208ENST00000606233 2264 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 DCAF4-212ENST00000553457 2896 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 AOAH-208ENST00000612871 2336 ntAPPRIS ALT2 TSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.55□□□□□ -1.2
MSX1P28360 AC011294.1-202ENST00000451905 1947 ntTSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
MSX1P28360 SLFN12-206ENST00000452764 2423 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
MSX1P28360 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
MSX1P28360 OR4D9-201ENST00000329328 945 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
MSX1P28360 RNY4P14-201ENST00000363656 96 ntBASIC7.55□□□□□ -1.2
MSX1P28360 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
MSX1P28360 IGHV2-5-201ENST00000390597 378 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
MSX1P28360 METTL5-204ENST00000409340 472 ntTSL 5 BASIC7.55□□□□□ -1.2
MSX1P28360 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC7.55□□□□□ -1.2
MSX1P28360 RPL21P111-201ENST00000418453 477 ntBASIC7.55□□□□□ -1.2
MSX1P28360 GAPDHP55-201ENST00000423136 803 ntBASIC7.55□□□□□ -1.2
MSX1P28360 NPM1P22-201ENST00000427761 952 ntBASIC7.55□□□□□ -1.2
MSX1P28360 EIF4A1P10-201ENST00000428832 1216 ntBASIC7.55□□□□□ -1.2
MSX1P28360 ECHDC1-207ENST00000430841 1009 ntAPPRIS P3 TSL 5 BASIC7.55□□□□□ -1.2
MSX1P28360 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.55□□□□□ -1.2
MSX1P28360 AL512286.1-201ENST00000439244 400 ntBASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms