Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HLA-DMBP28068 AC011369.2-201ENST00000624423 1567 ntBASIC4.89□□□□□ -1.63
HLA-DMBP28068 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
HLA-DMBP28068 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC4.89□□□□□ -1.63
HLA-DMBP28068 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HLA-DMBP28068 SAGE3P-201ENST00000619800 1635 ntBASIC4.89□□□□□ -1.63
HLA-DMBP28068 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
HLA-DMBP28068 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HLA-DMBP28068 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HLA-DMBP28068 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HLA-DMBP28068 AL731532.1-201ENST00000623972 4236 ntBASIC4.89□□□□□ -1.63
HLA-DMBP28068 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HLA-DMBP28068 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
HLA-DMBP28068 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC105235.1-201ENST00000623208 1816 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AP002512.4-202ENST00000641599 4530 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 BIN2P1-201ENST00000504996 1530 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 PPIAP24-201ENST00000328558 471 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 RGS5-202ENST00000367903 934 ntTSL 3 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 U3.52-201ENST00000384034 216 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 MIR191-201ENST00000384873 92 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 SNORD94-201ENST00000386037 137 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 U3.43-201ENST00000410734 213 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 MRPS21P5-201ENST00000417885 231 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 CYCSP52-201ENST00000422857 310 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL596268.1-201ENST00000427910 1048 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL590399.4-201ENST00000436561 601 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC064862.5-201ENST00000440618 334 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 E2F6P3-201ENST00000441743 743 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL121578.2-201ENST00000448797 447 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 VN1R38P-201ENST00000450265 887 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AP003385.3-201ENST00000472498 287 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 RPL19P11-201ENST00000495944 589 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 IGHV1-14-201ENST00000523391 241 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AP001804.1-201ENST00000526868 919 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 BTG1P1-201ENST00000540396 508 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 RN7SL208P-201ENST00000577964 296 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 CCL2-202ENST00000580907 736 ntTSL 2 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC009237.12-201ENST00000604755 742 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AL137246.2-201ENST00000613439 662 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC211486.4-201ENST00000621495 113 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 TEX41-255ENST00000626404 610 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC068769.1-201ENST00000474767 2426 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 AC010132.4-201ENST00000569883 1368 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 LINC01616-201ENST00000561816 2280 ntBASIC4.88□□□□□ -1.63
HLA-DMBP28068 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HLA-DMBP28068 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC4.88□□□□□ -1.63
HLA-DMBP28068 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HLA-DMBP28068 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HLA-DMBP28068 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HLA-DMBP28068 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
HLA-DMBP28068 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HLA-DMBP28068 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HLA-DMBP28068 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC4.87□□□□□ -1.63
HLA-DMBP28068 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HLA-DMBP28068 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
HLA-DMBP28068 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HLA-DMBP28068 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms