Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNA5SP44-201ENST00000410446 133 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC6.18□□□□□ -1.42
COL6A3P12111 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC004975.1-201ENST00000428733 208 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 AL355483.4-201ENST00000432653 470 ntTSL 3 BASIC6.18□□□□□ -1.42
COL6A3P12111 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.18□□□□□ -1.42
COL6A3P12111 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.18□□□□□ -1.42
COL6A3P12111 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.18□□□□□ -1.42
COL6A3P12111 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC103792.1-201ENST00000603591 919 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 HIRAP1-201ENST00000605318 787 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
COL6A3P12111 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
COL6A3P12111 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 MUC6-201ENST00000421673 8006 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
COL6A3P12111 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 TMF1-201ENST00000398559 6849 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 ZNF888-202ENST00000638862 4195 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 XRCC6P5-201ENST00000435236 1795 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 SORD-201ENST00000267814 4909 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 GABRA1-203ENST00000428797 4285 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
COL6A3P12111 TRIM51HP-202ENST00000530412 1823 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 MYH13-202ENST00000418404 6067 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.18□□□□□ -1.42
COL6A3P12111 RPL18P10-201ENST00000425606 538 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 AC245452.2-201ENST00000435222 392 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.18□□□□□ -1.42
COL6A3P12111 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC6.18□□□□□ -1.42
COL6A3P12111 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 PDE4DIP-237ENST00000585156 8439 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.18□□□□□ -1.42
COL6A3P12111 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
COL6A3P12111 CNOT7P1-201ENST00000429006 852 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 LDHBP2-201ENST00000456969 1005 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 AC055733.3-201ENST00000505214 523 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.18□□□□□ -1.42
COL6A3P12111 IGKV2-23-201ENST00000518729 323 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC6.18□□□□□ -1.42
COL6A3P12111 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC6.18□□□□□ -1.42
COL6A3P12111 MIR6780A-201ENST00000615089 68 ntBASIC6.18□□□□□ -1.42
COL6A3P12111 SHROOM3-201ENST00000296043 11020 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 LRPPRC-201ENST00000260665 6335 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL6A3P12111 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 CLIP1-201ENST00000302528 5833 ntAPPRIS P4 TSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 ATP5A1-202ENST00000398752 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 RALGAPB-201ENST00000262879 8663 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 RALGAPB-203ENST00000397042 8652 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 PBRM1-205ENST00000409057 4980 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 AL353796.1-201ENST00000561542 3241 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 SV2C-202ENST00000502798 11035 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 RNA5SP65-201ENST00000363166 119 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 AP000547.1-201ENST00000454360 617 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.17□□□□□ -1.42
COL6A3P12111 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC6.17□□□□□ -1.42
COL6A3P12111 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
COL6A3P12111 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.17□□□□□ -1.42
COL6A3P12111 AC008785.1-201ENST00000624475 456 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 PCDH12-201ENST00000231484 6562 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 KCTD6-201ENST00000355076 2425 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 GRAMD1B-206ENST00000529432 6266 ntTSL 2 BASIC6.17□□□□□ -1.42
COL6A3P12111 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 AC114776.1-201ENST00000414159 4395 ntTSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC6.17□□□□□ -1.42
COL6A3P12111 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL6A3P12111 GNAS-202ENST00000306090 477 ntTSL 5 BASIC6.17□□□□□ -1.42
COL6A3P12111 RNA5SP319-201ENST00000362768 119 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 OR2W4P-201ENST00000406496 926 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 NPM1P40-201ENST00000412758 733 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 OR5W1P-201ENST00000423705 938 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 AC245047.1-201ENST00000433276 873 ntBASIC6.17□□□□□ -1.42
COL6A3P12111 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms