Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC10.76□□□□□ -0.69
CUX2O14529 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC10.76□□□□□ -0.69
CUX2O14529 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC10.76□□□□□ -0.69
CUX2O14529 CASC19-264ENST00000641912 1184 ntBASIC10.76□□□□□ -0.69
CUX2O14529 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX2O14529 ZNF471-202ENST00000591537 5859 ntTSL 2 BASIC10.76□□□□□ -0.69
CUX2O14529 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX2O14529 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX2O14529 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC10.76□□□□□ -0.69
CUX2O14529 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
CUX2O14529 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CUX2O14529 SAGE3P-201ENST00000619800 1635 ntBASIC10.76□□□□□ -0.69
CUX2O14529 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
CUX2O14529 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
CUX2O14529 AC011447.6-201ENST00000623510 2598 ntBASIC10.76□□□□□ -0.69
CUX2O14529 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 AL132875.1-201ENST00000403623 949 ntBASIC10.75□□□□□ -0.69
CUX2O14529 AC245884.2-201ENST00000426257 404 ntBASIC10.75□□□□□ -0.69
CUX2O14529 AC006463.2-201ENST00000473326 348 ntBASIC10.75□□□□□ -0.69
CUX2O14529 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC10.75□□□□□ -0.69
CUX2O14529 AC018552.1-201ENST00000562099 811 ntBASIC10.75□□□□□ -0.69
CUX2O14529 AC015802.2-201ENST00000589690 189 ntBASIC10.75□□□□□ -0.69
CUX2O14529 METTL15-211ENST00000634762 718 ntTSL 5 BASIC10.75□□□□□ -0.69
CUX2O14529 AC089998.1-201ENST00000548575 3141 ntBASIC10.75□□□□□ -0.69
CUX2O14529 ERG-205ENST00000398910 4954 ntTSL 5 BASIC10.75□□□□□ -0.69
CUX2O14529 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 AC027088.4-201ENST00000611559 1947 ntBASIC10.75□□□□□ -0.69
CUX2O14529 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC10.75□□□□□ -0.69
CUX2O14529 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC10.75□□□□□ -0.69
CUX2O14529 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC10.75□□□□□ -0.69
CUX2O14529 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 RNF145-209ENST00000520638 2340 ntTSL 2 BASIC10.75□□□□□ -0.69
CUX2O14529 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CUX2O14529 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX2O14529 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC10.75□□□□□ -0.69
CUX2O14529 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 SNORD16-201ENST00000362803 99 ntBASIC10.74□□□□□ -0.69
CUX2O14529 RN7SKP213-201ENST00000410746 298 ntBASIC10.74□□□□□ -0.69
CUX2O14529 RPL26P29-201ENST00000415623 438 ntBASIC10.74□□□□□ -0.69
CUX2O14529 OR2AO1P-201ENST00000476497 403 ntBASIC10.74□□□□□ -0.69
CUX2O14529 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC10.74□□□□□ -0.69
CUX2O14529 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC10.74□□□□□ -0.69
CUX2O14529 PFKM-232ENST00000629846 381 ntTSL 4 BASIC10.74□□□□□ -0.69
CUX2O14529 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
CUX2O14529 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC10.74□□□□□ -0.69
CUX2O14529 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC10.74□□□□□ -0.69
CUX2O14529 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 AC015871.3-201ENST00000618835 2261 ntBASIC10.74□□□□□ -0.69
CUX2O14529 AF131215.2-201ENST00000531549 1710 ntBASIC10.74□□□□□ -0.69
CUX2O14529 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC10.74□□□□□ -0.69
CUX2O14529 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC10.74□□□□□ -0.69
CUX2O14529 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC10.74□□□□□ -0.69
CUX2O14529 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 MIR199B-201ENST00000384849 110 ntBASIC10.74□□□□□ -0.69
CUX2O14529 AL049697.3-201ENST00000406493 982 ntBASIC10.74□□□□□ -0.69
CUX2O14529 BX119917.1-201ENST00000432517 502 ntBASIC10.74□□□□□ -0.69
CUX2O14529 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC10.74□□□□□ -0.69
CUX2O14529 AC007537.2-201ENST00000472093 511 ntBASIC10.74□□□□□ -0.69
CUX2O14529 RN7SL222P-201ENST00000476452 299 ntBASIC10.74□□□□□ -0.69
CUX2O14529 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC10.74□□□□□ -0.69
CUX2O14529 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC10.74□□□□□ -0.69
CUX2O14529 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC10.74□□□□□ -0.69
CUX2O14529 FKBP1AP1-201ENST00000594588 318 ntBASIC10.74□□□□□ -0.69
CUX2O14529 AL136131.3-201ENST00000607600 188 ntBASIC10.74□□□□□ -0.69
CUX2O14529 SNORD91A-202ENST00000609620 191 ntBASIC10.74□□□□□ -0.69
CUX2O14529 AL121612.2-201ENST00000612261 482 ntBASIC10.74□□□□□ -0.69
CUX2O14529 AC183089.2-201ENST00000637931 916 ntBASIC10.74□□□□□ -0.69
CUX2O14529 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
CUX2O14529 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC10.73□□□□□ -0.69
CUX2O14529 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
CUX2O14529 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX2O14529 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CUX2O14529 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC10.73□□□□□ -0.69
CUX2O14529 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX2O14529 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
CUX2O14529 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX2O14529 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC10.73□□□□□ -0.69
CUX2O14529 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX2O14529 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
CUX2O14529 AC009237.1-201ENST00000442127 744 ntBASIC10.73□□□□□ -0.69
CUX2O14529 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC10.73□□□□□ -0.69
CUX2O14529 RN7SL172P-201ENST00000460535 303 ntBASIC10.73□□□□□ -0.69
CUX2O14529 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC10.73□□□□□ -0.69
CUX2O14529 NENFP3-201ENST00000503735 313 ntBASIC10.73□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms