Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6.59□□□□□ -1.36
HDDC3Q8N4P3 AL133243.4-201ENST00000623116 3109 ntBASIC6.59□□□□□ -1.36
HDDC3Q8N4P3 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC007993.1-201ENST00000621298 2430 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC119674.1-204ENST00000641348 1343 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 DNAJA1P5-201ENST00000440278 943 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 RPL5P7-201ENST00000444235 813 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC009963.3-201ENST00000458090 486 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 RPL5P14-201ENST00000494197 878 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC095057.1-201ENST00000507583 168 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC012146.2-201ENST00000576545 416 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 MIR6085-201ENST00000618314 110 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC018692.2-201ENST00000624130 348 ntBASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.58□□□□□ -1.36
HDDC3Q8N4P3 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 RPL11P4-201ENST00000332269 436 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 RN7SKP275-201ENST00000364626 301 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 LCN1P2-201ENST00000372030 223 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 TANK-203ENST00000402568 878 ntTSL 5 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 RPL5P20-201ENST00000403848 896 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AC010740.1-201ENST00000417035 684 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AC083862.1-201ENST00000427378 1242 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 PMS2P9-201ENST00000441237 515 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 RN7SL834P-201ENST00000461450 286 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 SUMO2P7-201ENST00000511179 285 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AC092375.1-201ENST00000550410 637 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AC067773.1-201ENST00000603284 1094 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AL356986.1-201ENST00000604085 341 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AL512356.3-201ENST00000623005 461 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 AL031651.1-201ENST00000615357 1438 ntBASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms