Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 FMO5-202ENST00000369272 2168 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HLA-CQ95604 CASP4-203ENST00000444739 2158 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HLA-CQ95604 AL731563.3-201ENST00000608005 3005 ntTSL 2 BASIC8.54□□□□□ -1.04
HLA-CQ95604 POU2F3-201ENST00000260264 2903 ntTSL 2 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC025283.2-203ENST00000618352 2905 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 BBS9-204ENST00000396127 3914 ntTSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 MCOLN2-202ENST00000370608 2871 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 ZSWIM1-202ENST00000372523 2769 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC010200.1-201ENST00000547380 1454 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 TP63-210ENST00000440651 2031 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 HMGCR-202ENST00000343975 3681 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 PIGK-201ENST00000359130 1926 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 LINC02245-201ENST00000449259 2928 ntTSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 THBS3-211ENST00000541990 2928 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 RNU4-73P-201ENST00000363164 141 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 Y_RNA.160-201ENST00000363677 92 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 RNU5F-7P-201ENST00000363696 115 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 RPS3AP23-201ENST00000401762 784 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 RN7SKP85-201ENST00000411349 318 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 LINC00676-201ENST00000416090 474 ntTSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC007742.1-201ENST00000425789 329 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 EIF4A1P10-201ENST00000428832 1216 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 SNX18P14-201ENST00000429308 574 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 VDAC2P3-201ENST00000430995 828 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AC005534.2-201ENST00000431047 433 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC8.53□□□□□ -1.04
HLA-CQ95604 RPL12P15-201ENST00000433385 499 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC8.53□□□□□ -1.04
HLA-CQ95604 OR5M13P-201ENST00000433944 937 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC8.53□□□□□ -1.04
HLA-CQ95604 ELOCP26-201ENST00000436067 329 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC244505.5-201ENST00000443639 207 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 HNRNPCP7-201ENST00000456056 905 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 ALG13-211ENST00000473389 693 ntTSL 2 BASIC8.53□□□□□ -1.04
HLA-CQ95604 RN7SL549P-201ENST00000478997 282 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 RN7SL741P-201ENST00000482473 289 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 HMGN1P13-201ENST00000505795 138 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC8.53□□□□□ -1.04
HLA-CQ95604 RPS23-208ENST00000512493 443 ntTSL 3 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AF279873.3-204ENST00000523336 784 ntTSL 2 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC027779.1-201ENST00000530492 516 ntTSL 3 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC126755.2-209ENST00000531453 699 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 OR4A7P-201ENST00000531463 910 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AC138969.1-212ENST00000541593 699 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 NPIPA5-203ENST00000543801 699 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC8.53□□□□□ -1.04
HLA-CQ95604 NIFKP8-201ENST00000560500 874 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC024614.1-201ENST00000577546 307 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC8.53□□□□□ -1.04
HLA-CQ95604 AP005137.2-201ENST00000609238 400 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 MIR6070-201ENST00000613967 103 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 AL445670.1-201ENST00000618889 801 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AL121985.2-201ENST00000621192 555 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AL359880.1-201ENST00000621879 266 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AC090574.1-201ENST00000623186 233 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 AC015871.5-202ENST00000623252 701 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 PCBP1-AS1-322ENST00000628147 553 ntTSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 TRIM23-201ENST00000231524 4186 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 AL591848.3-201ENST00000570141 2968 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 SLC12A3-203ENST00000563236 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC104574.2-201ENST00000559783 1985 ntTSL 3 BASIC8.53□□□□□ -1.04
HLA-CQ95604 CHD7-201ENST00000423902 11568 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 PTK2B-201ENST00000346049 4147 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 IL12B-201ENST00000231228 2761 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 RCAN1-205ENST00000443408 2315 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 SIMC1-201ENST00000332772 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC8.53□□□□□ -1.04
HLA-CQ95604 CAP1P2-201ENST00000417455 1409 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 RAB3GAP1-203ENST00000442034 4185 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 SMAP2-206ENST00000614549 2570 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 AC114689.1-201ENST00000578727 2484 ntBASIC8.53□□□□□ -1.04
HLA-CQ95604 UNC5C-201ENST00000453304 9875 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 RSL24D1-201ENST00000260443 2015 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HLA-CQ95604 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.04
HLA-CQ95604 CCDC36-201ENST00000296449 2613 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
HLA-CQ95604 ICK-201ENST00000350082 6116 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
HLA-CQ95604 MEFV-202ENST00000339854 2959 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.04
HLA-CQ95604 TCAF1-201ENST00000355951 3343 ntAPPRIS ALT1 TSL 1 (best) BASIC8.52□□□□□ -1.04
HLA-CQ95604 CNTNAP4-201ENST00000307431 4867 ntAPPRIS ALT1 TSL 5 BASIC8.52□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms