Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC016724.1-201ENST00000453215 421 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC096743.1-201ENST00000485172 319 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AC021220.1-201ENST00000507445 630 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC093816.1-201ENST00000515076 913 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXD4P09016 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC009729.1-201ENST00000548873 1133 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC005519.1-201ENST00000554490 601 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXD4P09016 AL499605.1-201ENST00000604628 403 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AC011891.2-201ENST00000604949 397 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AC114477.1-201ENST00000605097 605 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC012676.3-201ENST00000614983 479 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AC006328.2-201ENST00000623198 397 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AC012005.2-201ENST00000624333 397 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 TEX41-255ENST00000626404 610 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXD4P09016 CASC19-274ENST00000642018 970 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXD4P09016 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXD4P09016 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC009831.5-201ENST00000624000 3189 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC011455.2-201ENST00000599320 3336 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 AC005225.5-201ENST00000623547 2225 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
HOXD4P09016 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 AC074141.1-201ENST00000588129 2995 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
HOXD4P09016 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 RNA5SP232-201ENST00000364144 119 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
HOXD4P09016 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.04□□□□□ -1.44
HOXD4P09016 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.04□□□□□ -1.44
HOXD4P09016 OR6R1P-201ENST00000431838 940 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 AL590128.1-201ENST00000433407 286 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 RPSAP40-201ENST00000442343 891 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 AC068491.1-201ENST00000449539 1241 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 CCNJP2-201ENST00000457810 1163 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 AC135721.2-201ENST00000464237 300 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 OR7E22P-201ENST00000478335 1035 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 RN7SL413P-201ENST00000482700 297 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 RPS27P20-201ENST00000492051 246 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 RN7SL187P-201ENST00000495587 303 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC6.04□□□□□ -1.44
HOXD4P09016 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.04□□□□□ -1.44
HOXD4P09016 AC093815.1-201ENST00000508637 280 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 OR4A21P-201ENST00000532759 944 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 OR4A6P-201ENST00000534364 970 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 TDGP1-201ENST00000543961 1229 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.04□□□□□ -1.44
HOXD4P09016 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.04□□□□□ -1.44
HOXD4P09016 AC092718.2-202ENST00000566390 556 ntTSL 4 BASIC6.04□□□□□ -1.44
HOXD4P09016 MIR4420-201ENST00000583944 77 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 AC087575.1-201ENST00000585087 229 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 AC089999.3-201ENST00000622440 577 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
HOXD4P09016 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
HOXD4P09016 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 FO082842.1-201ENST00000423552 1370 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC6.04□□□□□ -1.44
HOXD4P09016 AC007114.2-201ENST00000576014 4281 ntBASIC6.04□□□□□ -1.44
HOXD4P09016 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXD4P09016 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms