Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.69□□□□□ -1.34
HDDC3Q8N4P3 AC005839.1-201ENST00000624148 3213 ntBASIC6.69□□□□□ -1.34
HDDC3Q8N4P3 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
HDDC3Q8N4P3 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC6.69□□□□□ -1.34
HDDC3Q8N4P3 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC6.69□□□□□ -1.34
HDDC3Q8N4P3 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC6.69□□□□□ -1.34
HDDC3Q8N4P3 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HDDC3Q8N4P3 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
HDDC3Q8N4P3 AP005139.1-201ENST00000580702 1647 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC096992.2-201ENST00000609553 1684 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC079949.2-201ENST00000617117 2933 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 RPL12P13-201ENST00000310055 497 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 PSMC1P2-201ENST00000423961 1204 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 VN1R20P-201ENST00000425215 966 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC099782.1-201ENST00000425889 474 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 CDK7P1-201ENST00000434574 693 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 CRYGGP-201ENST00000443337 145 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 RN7SL552P-201ENST00000462094 276 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC011411.1-201ENST00000509592 876 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 OR52K3P-201ENST00000531655 943 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 OOSP1P2-201ENST00000579644 351 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 SMIM12P1-201ENST00000603004 274 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC093635.1-201ENST00000609028 555 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC016252.1-201ENST00000609721 474 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 ABCA11P-202ENST00000504019 2110 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 AC090220.1-201ENST00000593078 1699 ntBASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.68□□□□□ -1.34
HDDC3Q8N4P3 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AL929472.1-201ENST00000417484 429 ntBASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AK3P5-201ENST00000432033 519 ntBASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC007679.3-201ENST00000434035 414 ntBASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 RN7SL39P-201ENST00000462264 297 ntBASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 LECT2-203ENST00000512872 762 ntTSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 IGLVIV-64-201ENST00000518581 301 ntBASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 SNORA70D-201ENST00000578836 135 ntBASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC010333.3-201ENST00000615100 402 ntBASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
HDDC3Q8N4P3 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms