Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC10.46□□□□□ -0.73
CUX1P39880 AC119674.1-202ENST00000641333 1860 ntBASIC10.46□□□□□ -0.73
CUX1P39880 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
CUX1P39880 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC10.46□□□□□ -0.73
CUX1P39880 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
CUX1P39880 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.74
CUX1P39880 OR9K1P-201ENST00000326513 941 ntBASIC10.46□□□□□ -0.74
CUX1P39880 OR11H13P-201ENST00000359695 979 ntBASIC10.46□□□□□ -0.74
CUX1P39880 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC10.46□□□□□ -0.74
CUX1P39880 AL445238.1-204ENST00000400311 463 ntBASIC10.46□□□□□ -0.74
CUX1P39880 MIR541-201ENST00000401360 84 ntBASIC10.46□□□□□ -0.74
CUX1P39880 DEFA9P-201ENST00000433042 285 ntBASIC10.46□□□□□ -0.74
CUX1P39880 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC10.46□□□□□ -0.74
CUX1P39880 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC10.46□□□□□ -0.74
CUX1P39880 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC10.46□□□□□ -0.74
CUX1P39880 MORF4-201ENST00000447135 971 ntBASIC10.46□□□□□ -0.74
CUX1P39880 GAS5-218ENST00000448718 565 ntTSL 2 BASIC10.46□□□□□ -0.74
CUX1P39880 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC10.46□□□□□ -0.74
CUX1P39880 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC10.46□□□□□ -0.74
CUX1P39880 SNX18P26-201ENST00000458433 740 ntBASIC10.46□□□□□ -0.74
CUX1P39880 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC10.46□□□□□ -0.74
CUX1P39880 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC10.46□□□□□ -0.74
CUX1P39880 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC10.46□□□□□ -0.74
CUX1P39880 AC069234.4-201ENST00000621276 412 ntBASIC10.46□□□□□ -0.74
CUX1P39880 AC018445.2-201ENST00000622987 260 ntBASIC10.46□□□□□ -0.74
CUX1P39880 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
CUX1P39880 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC10.46□□□□□ -0.74
CUX1P39880 AC105342.1-201ENST00000378334 6848 ntBASIC10.46□□□□□ -0.74
CUX1P39880 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
CUX1P39880 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.74
CUX1P39880 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
CUX1P39880 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
CUX1P39880 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
CUX1P39880 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC10.45□□□□□ -0.74
CUX1P39880 APP-206ENST00000359726 3294 ntTSL 2 BASIC10.45□□□□□ -0.74
CUX1P39880 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
CUX1P39880 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC10.45□□□□□ -0.74
CUX1P39880 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC10.45□□□□□ -0.74
CUX1P39880 SEPT14P12-201ENST00000442280 560 ntBASIC10.45□□□□□ -0.74
CUX1P39880 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC10.45□□□□□ -0.74
CUX1P39880 RN7SL269P-201ENST00000467795 305 ntBASIC10.45□□□□□ -0.74
CUX1P39880 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC10.45□□□□□ -0.74
CUX1P39880 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC10.45□□□□□ -0.74
CUX1P39880 TMEM97P2-201ENST00000517841 403 ntBASIC10.45□□□□□ -0.74
CUX1P39880 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC10.45□□□□□ -0.74
CUX1P39880 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC10.45□□□□□ -0.74
CUX1P39880 GNG2-208ENST00000554875 430 ntTSL 5 BASIC10.45□□□□□ -0.74
CUX1P39880 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC10.45□□□□□ -0.74
CUX1P39880 AC106872.5-201ENST00000508856 1416 ntBASIC10.45□□□□□ -0.74
CUX1P39880 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
CUX1P39880 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
CUX1P39880 AC105114.1-201ENST00000624795 1862 ntBASIC10.45□□□□□ -0.74
CUX1P39880 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
CUX1P39880 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC10.45□□□□□ -0.74
CUX1P39880 MCF2L2-203ENST00000447025 2394 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
CUX1P39880 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX1P39880 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC10.45□□□□□ -0.74
CUX1P39880 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC10.45□□□□□ -0.74
CUX1P39880 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX1P39880 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
CUX1P39880 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX1P39880 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC10.44□□□□□ -0.74
CUX1P39880 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX1P39880 RNA5SP132-201ENST00000364725 118 ntBASIC10.44□□□□□ -0.74
CUX1P39880 MIR143-201ENST00000385300 106 ntBASIC10.44□□□□□ -0.74
CUX1P39880 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX1P39880 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC10.44□□□□□ -0.74
CUX1P39880 OR7E101P-201ENST00000400428 513 ntBASIC10.44□□□□□ -0.74
CUX1P39880 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX1P39880 RPL35AP31-201ENST00000418340 337 ntBASIC10.44□□□□□ -0.74
CUX1P39880 KIF4CP-201ENST00000422742 1279 ntBASIC10.44□□□□□ -0.74
CUX1P39880 DNAJA1P6-201ENST00000437347 354 ntBASIC10.44□□□□□ -0.74
CUX1P39880 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC10.44□□□□□ -0.74
CUX1P39880 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC10.44□□□□□ -0.74
CUX1P39880 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX1P39880 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC10.44□□□□□ -0.74
CUX1P39880 AC104695.2-201ENST00000605056 775 ntBASIC10.44□□□□□ -0.74
CUX1P39880 EML5-201ENST00000380664 5910 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX1P39880 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX1P39880 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX1P39880 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX1P39880 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC10.44□□□□□ -0.74
CUX1P39880 USP3-201ENST00000268049 5311 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX1P39880 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX1P39880 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX1P39880 PPFIBP1-207ENST00000537927 5719 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CUX1P39880 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX1P39880 DPPA2P3-201ENST00000411853 655 ntBASIC10.43□□□□□ -0.74
CUX1P39880 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX1P39880 COPS8P2-201ENST00000473228 627 ntBASIC10.43□□□□□ -0.74
CUX1P39880 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX1P39880 AC008410.1-201ENST00000483777 339 ntBASIC10.43□□□□□ -0.74
CUX1P39880 UBA52P7-201ENST00000486088 380 ntBASIC10.43□□□□□ -0.74
CUX1P39880 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX1P39880 SSX6-203ENST00000509958 336 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX1P39880 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 AL356801.1-201ENST00000559320 294 ntBASIC10.43□□□□□ -0.74
CUX1P39880 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CUX1P39880 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC10.43□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms