Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GPM6A-221ENST00000515090 1500 ntTSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 TTC33-205ENST00000636106 2252 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 ZNF611-204ENST00000543227 4517 ntAPPRIS P1 TSL 4 BASIC7.63□□□□□ -1.19
MSX1P28360 RNF14-203ENST00000394514 2905 ntTSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 ARL6IP5-201ENST00000273258 2101 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 TOPORSLP1-201ENST00000467693 2102 ntBASIC7.63□□□□□ -1.19
MSX1P28360 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 SEPT4-211ENST00000579371 1362 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 ZNF195-230ENST00000620374 3342 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 STMND1-203ENST00000536551 1322 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 LDB3-201ENST00000263066 3873 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 C4BPB-201ENST00000243611 1117 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
MSX1P28360 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 SNORA63-201ENST00000363450 132 ntBASIC7.63□□□□□ -1.19
MSX1P28360 RNA5SP336-201ENST00000364189 117 ntBASIC7.63□□□□□ -1.19
MSX1P28360 ATF3-204ENST00000366983 858 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 RNU1-8P-201ENST00000384328 165 ntBASIC7.63□□□□□ -1.19
MSX1P28360 MORF4L1P1-201ENST00000404582 967 ntBASIC7.63□□□□□ -1.19
MSX1P28360 GHRHR-204ENST00000409316 1292 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 AL450468.1-201ENST00000415166 450 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 BTF3P9-201ENST00000418784 283 ntBASIC7.63□□□□□ -1.19
MSX1P28360 ENTPD3-AS1-201ENST00000420850 791 ntTSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 GTF2IP23-201ENST00000423746 351 ntBASIC7.63□□□□□ -1.19
MSX1P28360 TRBV10-2-201ENST00000426318 395 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
MSX1P28360 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC7.63□□□□□ -1.19
MSX1P28360 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 LINC01007-203ENST00000451953 579 ntTSL 4 BASIC7.63□□□□□ -1.19
MSX1P28360 RN7SL63P-201ENST00000468228 304 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AC016687.1-201ENST00000482574 353 ntBASIC7.63□□□□□ -1.19
MSX1P28360 NIPA2P2-201ENST00000496376 1083 ntBASIC7.63□□□□□ -1.19
MSX1P28360 RPL4P1-201ENST00000496596 1278 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AC105252.1-201ENST00000503089 286 ntBASIC7.63□□□□□ -1.19
MSX1P28360 ENPP7P10-201ENST00000504828 933 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AC226119.2-201ENST00000513501 530 ntBASIC7.63□□□□□ -1.19
MSX1P28360 SNORA70.23-201ENST00000517218 151 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AC060765.1-202ENST00000518367 257 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 PSAT1P1-201ENST00000518968 1106 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 LINC01499-201ENST00000528720 553 ntTSL 4 BASIC7.63□□□□□ -1.19
MSX1P28360 AC048344.2-201ENST00000547280 147 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 AC021755.3-201ENST00000560376 864 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 AC006960.3-201ENST00000561845 705 ntBASIC7.63□□□□□ -1.19
MSX1P28360 ANP32BP1-201ENST00000564205 1297 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AC009118.1-201ENST00000566019 374 ntTSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 OR4K7P-201ENST00000580232 945 ntBASIC7.63□□□□□ -1.19
MSX1P28360 GOSR1-212ENST00000581721 756 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 AL358335.3-201ENST00000604678 327 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AL162730.1-201ENST00000605734 292 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AC239600.2-201ENST00000619615 1165 ntBASIC7.63□□□□□ -1.19
MSX1P28360 Metazoa_SRP.108-201ENST00000621610 300 ntBASIC7.63□□□□□ -1.19
MSX1P28360 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC7.63□□□□□ -1.19
MSX1P28360 TRIM37-214ENST00000625984 204 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 VPS8-228ENST00000628962 207 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 ZNF92-202ENST00000357512 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 ABCF2P1-201ENST00000465687 1867 ntBASIC7.63□□□□□ -1.19
MSX1P28360 ACTR6-201ENST00000188312 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 CEACAM7-201ENST00000006724 2489 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 OR51D1-202ENST00000641817 3561 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
MSX1P28360 ASB15-205ENST00000451215 2956 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 GPD2-203ENST00000409674 2397 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 FAH-204ENST00000539156 3427 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 RASSF5-209ENST00000636182 3427 ntTSL 5 BASIC7.63□□□□□ -1.19
MSX1P28360 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 GLYATL2-201ENST00000287275 1640 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 NELL2-202ENST00000395487 3203 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSX1P28360 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC7.63□□□□□ -1.19
MSX1P28360 ERCC8-201ENST00000265038 2017 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 LINC00501-201ENST00000425388 2046 ntTSL 2 BASIC7.62□□□□□ -1.19
MSX1P28360 DARS2-201ENST00000361951 3506 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 GSTM4-203ENST00000369833 3990 ntTSL 5 BASIC7.62□□□□□ -1.19
MSX1P28360 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.62□□□□□ -1.19
MSX1P28360 TRIM60P19-201ENST00000452879 1462 ntBASIC7.62□□□□□ -1.19
MSX1P28360 SLC2A3P4-201ENST00000521259 1471 ntBASIC7.62□□□□□ -1.19
MSX1P28360 DHX32-202ENST00000368721 2389 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 MMGT1-201ENST00000305963 3738 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 CD40LG-202ENST00000370629 1817 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 OR2A4-201ENST00000315453 1758 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
MSX1P28360 AL079343.1-201ENST00000572358 1771 ntBASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms