Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SOX3P41225 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SOX3P41225 RNU4-64P-201ENST00000410795 131 ntBASIC6.15□□□□□ -1.42
SOX3P41225 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SOX3P41225 AC092106.2-201ENST00000436597 487 ntBASIC6.15□□□□□ -1.42
SOX3P41225 UBBP5-201ENST00000446970 266 ntBASIC6.15□□□□□ -1.42
SOX3P41225 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SOX3P41225 AC004890.1-201ENST00000461005 181 ntBASIC6.15□□□□□ -1.42
SOX3P41225 RN7SL836P-201ENST00000476140 296 ntBASIC6.15□□□□□ -1.42
SOX3P41225 AC044810.1-201ENST00000480271 711 ntBASIC6.15□□□□□ -1.42
SOX3P41225 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC6.15□□□□□ -1.42
SOX3P41225 OR52H2P-201ENST00000514607 902 ntBASIC6.15□□□□□ -1.42
SOX3P41225 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.15□□□□□ -1.42
SOX3P41225 RNA5SP116-201ENST00000516132 98 ntBASIC6.15□□□□□ -1.42
SOX3P41225 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.15□□□□□ -1.42
SOX3P41225 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SOX3P41225 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC6.15□□□□□ -1.42
SOX3P41225 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SOX3P41225 AC090527.1-201ENST00000557965 431 ntTSL 3 BASIC6.15□□□□□ -1.42
SOX3P41225 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.15□□□□□ -1.42
SOX3P41225 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 AC010333.3-201ENST00000615100 402 ntBASIC6.15□□□□□ -1.42
SOX3P41225 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
SOX3P41225 PSMC1P4-201ENST00000515236 1327 ntBASIC6.15□□□□□ -1.43
SOX3P41225 AC087392.3-202ENST00000358446 1754 ntBASIC6.15□□□□□ -1.43
SOX3P41225 MELK-211ENST00000545008 2236 ntTSL 2 BASIC6.15□□□□□ -1.43
SOX3P41225 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.15□□□□□ -1.43
SOX3P41225 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SOX3P41225 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
SOX3P41225 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC6.15□□□□□ -1.43
SOX3P41225 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.15□□□□□ -1.43
SOX3P41225 AC073365.1-203ENST00000641055 1992 ntBASIC6.15□□□□□ -1.43
SOX3P41225 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
SOX3P41225 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.15□□□□□ -1.43
SOX3P41225 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
SOX3P41225 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 HCFC2P1-201ENST00000392864 1592 ntBASIC6.14□□□□□ -1.43
SOX3P41225 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.14□□□□□ -1.43
SOX3P41225 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.14□□□□□ -1.43
SOX3P41225 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
SOX3P41225 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 AL451142.1-201ENST00000375867 775 ntBASIC6.14□□□□□ -1.43
SOX3P41225 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 RN7SKP146-201ENST00000410242 334 ntBASIC6.14□□□□□ -1.43
SOX3P41225 RN7SKP296-201ENST00000411185 341 ntBASIC6.14□□□□□ -1.43
SOX3P41225 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC6.14□□□□□ -1.43
SOX3P41225 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 AL691447.1-201ENST00000419456 387 ntBASIC6.14□□□□□ -1.43
SOX3P41225 GAPDHP19-201ENST00000431768 1005 ntBASIC6.14□□□□□ -1.43
SOX3P41225 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 GAPDHP37-201ENST00000442317 968 ntBASIC6.14□□□□□ -1.43
SOX3P41225 RPS18P1-201ENST00000447840 458 ntBASIC6.14□□□□□ -1.43
SOX3P41225 AC099670.1-201ENST00000455141 783 ntBASIC6.14□□□□□ -1.43
SOX3P41225 YRDCP3-201ENST00000456507 480 ntBASIC6.14□□□□□ -1.43
SOX3P41225 EIF4E2P2-201ENST00000492033 736 ntBASIC6.14□□□□□ -1.43
SOX3P41225 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC6.14□□□□□ -1.43
SOX3P41225 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC6.14□□□□□ -1.43
SOX3P41225 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC6.14□□□□□ -1.43
SOX3P41225 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
SOX3P41225 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 AC092718.2-202ENST00000566390 556 ntTSL 4 BASIC6.14□□□□□ -1.43
SOX3P41225 AC004232.1-201ENST00000571388 208 ntBASIC6.14□□□□□ -1.43
SOX3P41225 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 MIR3157-201ENST00000578688 85 ntBASIC6.14□□□□□ -1.43
SOX3P41225 AC011921.2-201ENST00000589465 152 ntBASIC6.14□□□□□ -1.43
SOX3P41225 AL953862.2-201ENST00000603089 820 ntBASIC6.14□□□□□ -1.43
SOX3P41225 SNORD96A-201ENST00000606577 79 ntBASIC6.14□□□□□ -1.43
SOX3P41225 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.14□□□□□ -1.43
SOX3P41225 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 TEX41-255ENST00000626404 610 ntTSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC6.14□□□□□ -1.43
SOX3P41225 PSMC1P6-201ENST00000477233 1319 ntBASIC6.14□□□□□ -1.43
SOX3P41225 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.14□□□□□ -1.43
SOX3P41225 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 AC217777.1-201ENST00000570034 1471 ntBASIC6.14□□□□□ -1.43
SOX3P41225 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.14□□□□□ -1.43
SOX3P41225 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX3P41225 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
SOX3P41225 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX3P41225 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX3P41225 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms