Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC013731.1-201ENST00000604340 883 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 AC239803.2-201ENST00000610161 430 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 MIR6829-201ENST00000620375 67 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC8.2□□□□□ -1.1
HMGB1P09429 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 AC092111.1-201ENST00000618256 3358 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 HSPA8P17-201ENST00000427029 1382 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 MAPK10-379ENST00000642013 1385 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC8.2□□□□□ -1.1
HMGB1P09429 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 AC007406.5-201ENST00000570140 3170 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 MAPK10-323ENST00000641493 3207 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
HMGB1P09429 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC8.19□□□□□ -1.1
HMGB1P09429 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC8.19□□□□□ -1.1
HMGB1P09429 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 OR5T3-201ENST00000303059 1023 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 RNU1-24P-201ENST00000364285 165 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 NOX4-203ENST00000375979 816 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 RNA5SP280-201ENST00000411230 115 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC8.19□□□□□ -1.1
HMGB1P09429 AL590806.1-201ENST00000415818 853 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 AC007365.2-201ENST00000428806 458 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 CENPN-204ENST00000428963 971 ntTSL 2 BASIC8.19□□□□□ -1.1
HMGB1P09429 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC8.19□□□□□ -1.1
HMGB1P09429 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC8.19□□□□□ -1.1
HMGB1P09429 MRPS33P4-201ENST00000434892 317 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 AC046176.1-201ENST00000435260 1170 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC8.19□□□□□ -1.1
HMGB1P09429 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC8.19□□□□□ -1.1
HMGB1P09429 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 AC005517.1-201ENST00000452091 489 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC8.19□□□□□ -1.1
HMGB1P09429 RN7SL379P-201ENST00000479912 293 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 AC010409.2-201ENST00000505780 478 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 RNU6-760P-201ENST00000516078 97 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 IGLC4-201ENST00000517690 248 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC8.19□□□□□ -1.1
HMGB1P09429 PDCL3P1-201ENST00000534575 734 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC8.19□□□□□ -1.1
HMGB1P09429 AC006120.1-201ENST00000579375 546 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC8.19□□□□□ -1.1
HMGB1P09429 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC8.19□□□□□ -1.1
HMGB1P09429 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
HMGB1P09429 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
HMGB1P09429 AC119674.1-204ENST00000641348 1343 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 SNX18P3-202ENST00000565670 1750 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC8.19□□□□□ -1.1
HMGB1P09429 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC8.19□□□□□ -1.1
HMGB1P09429 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC8.19□□□□□ -1.1
HMGB1P09429 KCNMB3P1-202ENST00000493696 3389 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC8.19□□□□□ -1.1
HMGB1P09429 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HMGB1P09429 CASC19-243ENST00000641588 1546 ntBASIC8.19□□□□□ -1.1
HMGB1P09429 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC8.18□□□□□ -1.1
HMGB1P09429 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
HMGB1P09429 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC8.18□□□□□ -1.1
HMGB1P09429 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC8.18□□□□□ -1.1
HMGB1P09429 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
HMGB1P09429 AP002800.1-201ENST00000624982 2225 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC8.18□□□□□ -1.1
HMGB1P09429 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
HMGB1P09429 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
HMGB1P09429 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
HMGB1P09429 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC8.18□□□□□ -1.1
HMGB1P09429 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC8.18□□□□□ -1.1
HMGB1P09429 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC8.18□□□□□ -1.1
HMGB1P09429 AC018804.1-201ENST00000430381 618 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 RPL14P5-201ENST00000436474 730 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 ARPP21-217ENST00000436702 561 ntTSL 4 BASIC8.18□□□□□ -1.1
HMGB1P09429 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC8.18□□□□□ -1.1
HMGB1P09429 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC8.18□□□□□ -1.1
HMGB1P09429 AC114755.1-201ENST00000453101 868 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 MED28P7-201ENST00000456611 530 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 AC063955.1-201ENST00000462872 685 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 RN7SL149P-201ENST00000465197 281 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 RN7SL776P-201ENST00000493390 268 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 AL135933.1-201ENST00000498657 802 ntBASIC8.18□□□□□ -1.1
HMGB1P09429 AC011352.2-201ENST00000514574 1016 ntBASIC8.18□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms