Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.9□□□□□ -1.3
APOEP02649 PSMC1P6-201ENST00000477233 1319 ntBASIC6.9□□□□□ -1.3
APOEP02649 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
APOEP02649 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
APOEP02649 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.9□□□□□ -1.31
APOEP02649 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.9□□□□□ -1.31
APOEP02649 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
APOEP02649 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
APOEP02649 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.9□□□□□ -1.31
APOEP02649 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.31
APOEP02649 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
APOEP02649 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.9□□□□□ -1.31
APOEP02649 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.9□□□□□ -1.31
APOEP02649 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
APOEP02649 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.89□□□□□ -1.31
APOEP02649 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
APOEP02649 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
APOEP02649 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
APOEP02649 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC6.89□□□□□ -1.31
APOEP02649 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 TVP23CP1-201ENST00000450317 639 ntBASIC6.89□□□□□ -1.31
APOEP02649 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 SNRPCP11-201ENST00000492453 205 ntBASIC6.89□□□□□ -1.31
APOEP02649 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.89□□□□□ -1.31
APOEP02649 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.89□□□□□ -1.31
APOEP02649 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.89□□□□□ -1.31
APOEP02649 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.89□□□□□ -1.31
APOEP02649 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 AP003115.1-201ENST00000569849 463 ntBASIC6.89□□□□□ -1.31
APOEP02649 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.89□□□□□ -1.31
APOEP02649 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.89□□□□□ -1.31
APOEP02649 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.89□□□□□ -1.31
APOEP02649 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.89□□□□□ -1.31
APOEP02649 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 LRRC37A15P-201ENST00000514785 1355 ntBASIC6.89□□□□□ -1.31
APOEP02649 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 AL391261.1-201ENST00000555712 1479 ntBASIC6.89□□□□□ -1.31
APOEP02649 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.89□□□□□ -1.31
APOEP02649 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
APOEP02649 AC025809.2-201ENST00000625085 1802 ntBASIC6.89□□□□□ -1.31
APOEP02649 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
APOEP02649 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.89□□□□□ -1.31
APOEP02649 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.89□□□□□ -1.31
APOEP02649 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
APOEP02649 SMG1P5-202ENST00000529428 4219 ntBASIC6.89□□□□□ -1.31
APOEP02649 SMG1P2-201ENST00000566127 4221 ntBASIC6.89□□□□□ -1.31
APOEP02649 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
APOEP02649 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.88□□□□□ -1.31
APOEP02649 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 AC007485.2-201ENST00000623493 1667 ntBASIC6.88□□□□□ -1.31
APOEP02649 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
APOEP02649 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 PPIAP24-201ENST00000328558 471 ntBASIC6.88□□□□□ -1.31
APOEP02649 RNA5SP333-201ENST00000363466 118 ntBASIC6.88□□□□□ -1.31
APOEP02649 RNA5SP334-201ENST00000364825 118 ntBASIC6.88□□□□□ -1.31
APOEP02649 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
APOEP02649 AC092106.2-201ENST00000436597 487 ntBASIC6.88□□□□□ -1.31
APOEP02649 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.88□□□□□ -1.31
APOEP02649 GAPDHP33-201ENST00000443168 1013 ntBASIC6.88□□□□□ -1.31
APOEP02649 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.88□□□□□ -1.31
APOEP02649 AC015524.1-201ENST00000491585 472 ntBASIC6.88□□□□□ -1.31
APOEP02649 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC6.88□□□□□ -1.31
APOEP02649 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.88□□□□□ -1.31
APOEP02649 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.88□□□□□ -1.31
APOEP02649 MIR4732-201ENST00000581873 76 ntBASIC6.88□□□□□ -1.31
APOEP02649 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.88□□□□□ -1.31
APOEP02649 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.88□□□□□ -1.31
APOEP02649 SNORD96A-201ENST00000606577 79 ntBASIC6.88□□□□□ -1.31
APOEP02649 AC005277.2-201ENST00000617898 390 ntBASIC6.88□□□□□ -1.31
APOEP02649 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 SNX18P10-201ENST00000625014 519 ntBASIC6.88□□□□□ -1.31
APOEP02649 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.88□□□□□ -1.31
APOEP02649 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.88□□□□□ -1.31
APOEP02649 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.88□□□□□ -1.31
APOEP02649 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
APOEP02649 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms