Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
LIG1P18858 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
LIG1P18858 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 AC020978.6-201ENST00000571197 3177 ntBASIC8.24□□□□□ -1.09
LIG1P18858 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC8.24□□□□□ -1.09
LIG1P18858 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 AL157713.1-201ENST00000379752 1531 ntBASIC8.24□□□□□ -1.09
LIG1P18858 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC8.24□□□□□ -1.09
LIG1P18858 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC8.24□□□□□ -1.09
LIG1P18858 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC8.24□□□□□ -1.09
LIG1P18858 NACAP1-201ENST00000419462 1555 ntTSL 2 BASIC8.24□□□□□ -1.09
LIG1P18858 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 RNU11-6P-201ENST00000391127 133 ntBASIC8.24□□□□□ -1.09
LIG1P18858 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC8.24□□□□□ -1.09
LIG1P18858 ZNF602P-201ENST00000405929 924 ntBASIC8.24□□□□□ -1.09
LIG1P18858 RPL12P10-201ENST00000413498 498 ntBASIC8.24□□□□□ -1.09
LIG1P18858 AL031779.1-201ENST00000415663 330 ntBASIC8.24□□□□□ -1.09
LIG1P18858 LINC00462-201ENST00000425350 962 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 AC104698.1-201ENST00000435671 276 ntBASIC8.24□□□□□ -1.09
LIG1P18858 ST13P2-201ENST00000438916 1109 ntBASIC8.24□□□□□ -1.09
LIG1P18858 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC8.24□□□□□ -1.09
LIG1P18858 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC8.24□□□□□ -1.09
LIG1P18858 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC8.24□□□□□ -1.09
LIG1P18858 SSR3-208ENST00000496050 579 ntTSL 4 BASIC8.24□□□□□ -1.09
LIG1P18858 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC8.24□□□□□ -1.09
LIG1P18858 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC8.24□□□□□ -1.09
LIG1P18858 MTND4P2-201ENST00000507767 1203 ntBASIC8.24□□□□□ -1.09
LIG1P18858 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC8.24□□□□□ -1.09
LIG1P18858 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC8.24□□□□□ -1.09
LIG1P18858 RNU5A-7P-201ENST00000515979 116 ntBASIC8.24□□□□□ -1.09
LIG1P18858 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC8.24□□□□□ -1.09
LIG1P18858 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC8.24□□□□□ -1.09
LIG1P18858 OR7E10P-201ENST00000526420 991 ntBASIC8.24□□□□□ -1.09
LIG1P18858 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC8.24□□□□□ -1.09
LIG1P18858 AP003066.2-201ENST00000529375 555 ntBASIC8.24□□□□□ -1.09
LIG1P18858 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC8.24□□□□□ -1.09
LIG1P18858 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.09
LIG1P18858 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC8.24□□□□□ -1.09
LIG1P18858 OR5AH1P-201ENST00000595968 283 ntBASIC8.24□□□□□ -1.09
LIG1P18858 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC8.24□□□□□ -1.09
LIG1P18858 AC245389.2-201ENST00000616023 576 ntBASIC8.24□□□□□ -1.09
LIG1P18858 AC078880.5-201ENST00000617845 421 ntBASIC8.24□□□□□ -1.09
LIG1P18858 AC242843.1-201ENST00000618702 573 ntBASIC8.24□□□□□ -1.09
LIG1P18858 PART1_3.1-201ENST00000619680 131 ntBASIC8.24□□□□□ -1.09
LIG1P18858 LINC00216-201ENST00000623548 1126 ntBASIC8.24□□□□□ -1.09
LIG1P18858 AC034229.6-201ENST00000623704 224 ntBASIC8.24□□□□□ -1.09
LIG1P18858 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC8.24□□□□□ -1.09
LIG1P18858 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC8.24□□□□□ -1.09
LIG1P18858 CUBNP3-201ENST00000457461 1784 ntBASIC8.24□□□□□ -1.09
LIG1P18858 KARSP2-201ENST00000415696 1639 ntBASIC8.24□□□□□ -1.09
LIG1P18858 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC8.24□□□□□ -1.09
LIG1P18858 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
LIG1P18858 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC8.24□□□□□ -1.09
LIG1P18858 OR51M1-203ENST00000642046 4092 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
LIG1P18858 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
LIG1P18858 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC8.23□□□□□ -1.09
LIG1P18858 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
LIG1P18858 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC8.23□□□□□ -1.09
LIG1P18858 AL078595.2-201ENST00000605309 1780 ntBASIC8.23□□□□□ -1.09
LIG1P18858 PWRN1-212ENST00000569908 1435 ntBASIC8.23□□□□□ -1.09
LIG1P18858 AC061975.5-201ENST00000584928 1441 ntBASIC8.23□□□□□ -1.09
LIG1P18858 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC8.23□□□□□ -1.09
LIG1P18858 CAGE1-208ENST00000512086 2537 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
LIG1P18858 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
LIG1P18858 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC8.23□□□□□ -1.09
LIG1P18858 RNU6-792P-201ENST00000363490 107 ntBASIC8.23□□□□□ -1.09
LIG1P18858 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
LIG1P18858 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
LIG1P18858 MXI1-204ENST00000369612 879 ntTSL 3 BASIC8.23□□□□□ -1.09
LIG1P18858 MIR640-201ENST00000385086 96 ntBASIC8.23□□□□□ -1.09
LIG1P18858 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC8.23□□□□□ -1.09
LIG1P18858 AC119751.3-201ENST00000399720 670 ntBASIC8.23□□□□□ -1.09
LIG1P18858 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC8.23□□□□□ -1.09
LIG1P18858 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC8.23□□□□□ -1.09
LIG1P18858 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC8.23□□□□□ -1.09
LIG1P18858 HYALP1-201ENST00000417674 1279 ntBASIC8.23□□□□□ -1.09
LIG1P18858 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC8.23□□□□□ -1.09
LIG1P18858 AC016907.1-201ENST00000419483 435 ntBASIC8.23□□□□□ -1.09
LIG1P18858 AC008758.2-201ENST00000420038 695 ntTSL 2 BASIC8.23□□□□□ -1.09
LIG1P18858 OR5P4P-201ENST00000424698 917 ntBASIC8.23□□□□□ -1.09
LIG1P18858 FDPSP1-201ENST00000424976 1071 ntBASIC8.23□□□□□ -1.09
LIG1P18858 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC8.23□□□□□ -1.09
LIG1P18858 AC244505.2-201ENST00000435089 759 ntBASIC8.23□□□□□ -1.09
LIG1P18858 AC245047.2-201ENST00000441060 530 ntBASIC8.23□□□□□ -1.09
LIG1P18858 AC007000.2-201ENST00000442564 487 ntBASIC8.23□□□□□ -1.09
LIG1P18858 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
LIG1P18858 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC8.23□□□□□ -1.09
LIG1P18858 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC8.23□□□□□ -1.09
LIG1P18858 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC8.23□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 535.1 ms