Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 AC112907.3-201ENST00000577781 2400 ntBASIC20.81■□□□□ 0.92
USP3Q9Y6I4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 AC239809.2-201ENST00000415381 517 ntBASIC20.81■□□□□ 0.92
USP3Q9Y6I4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.81■□□□□ 0.92
USP3Q9Y6I4 PHGDH-210ENST00000641115 1638 ntBASIC20.81■□□□□ 0.92
USP3Q9Y6I4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 TFP1-202ENST00000475455 1573 ntBASIC20.8■□□□□ 0.92
USP3Q9Y6I4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 UBE2SP1-201ENST00000450587 669 ntBASIC20.8■□□□□ 0.92
USP3Q9Y6I4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 AC066615.1-201ENST00000640911 628 ntBASIC20.8■□□□□ 0.92
USP3Q9Y6I4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.8■□□□□ 0.92
USP3Q9Y6I4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 TCF3P1-201ENST00000423021 1937 ntBASIC20.79■□□□□ 0.92
USP3Q9Y6I4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 KRASP1-201ENST00000407852 552 ntBASIC20.79■□□□□ 0.92
USP3Q9Y6I4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 AC110285.5-201ENST00000611501 352 ntBASIC20.79■□□□□ 0.92
USP3Q9Y6I4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 AC018553.1-201ENST00000616682 1458 ntBASIC20.79■□□□□ 0.92
USP3Q9Y6I4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.79■□□□□ 0.92
USP3Q9Y6I4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 FAM197Y4-202ENST00000622692 608 ntBASIC20.78■□□□□ 0.92
USP3Q9Y6I4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP3Q9Y6I4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.77■□□□□ 0.92
USP3Q9Y6I4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms