Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SSX2IPQ9Y2D8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SSX2IPQ9Y2D8 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.35■■□□□ 1.01
SSX2IPQ9Y2D8 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 Z98882.1-201ENST00000622160 2253 ntBASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 AC087499.1-201ENST00000418141 1075 ntBASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 AL355075.4-201ENST00000554988 638 ntBASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX2IPQ9Y2D8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 AC073195.1-201ENST00000607241 877 ntBASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.33■■□□□ 1.01
SSX2IPQ9Y2D8 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SSX2IPQ9Y2D8 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.33■■□□□ 1
SSX2IPQ9Y2D8 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SSX2IPQ9Y2D8 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SSX2IPQ9Y2D8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 MIR1224-201ENST00000408193 85 ntBASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 CD177P1-201ENST00000606252 935 ntBASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 AL049796.1-201ENST00000565336 1766 ntBASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX2IPQ9Y2D8 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 AP003071.4-201ENST00000562276 1284 ntBASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 AC097493.4-201ENST00000641197 219 ntBASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SSX2IPQ9Y2D8 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.3■■□□□ 1
SSX2IPQ9Y2D8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.3■■□□□ 1
SSX2IPQ9Y2D8 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.3■■□□□ 1
SSX2IPQ9Y2D8 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.3■■□□□ 1
SSX2IPQ9Y2D8 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.3■■□□□ 1
SSX2IPQ9Y2D8 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.3■■□□□ 1
SSX2IPQ9Y2D8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SSX2IPQ9Y2D8 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.3■■□□□ 1
SSX2IPQ9Y2D8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms