Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 RPS2P52-201ENST00000469610 820 ntBASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCIF1Q9H4Z3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 AC008687.6-201ENST00000596318 630 ntBASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 AC120498.8-201ENST00000614275 531 ntBASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCIF1Q9H4Z3 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCIF1Q9H4Z3 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
PCIF1Q9H4Z3 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 AP003097.1-201ENST00000530657 1135 ntBASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCIF1Q9H4Z3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCIF1Q9H4Z3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCIF1Q9H4Z3 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms