Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AL133373.2-201ENST00000623187 2828 ntBASIC17.45■□□□□ 0.38
MMP28Q9H239 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
MMP28Q9H239 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.45■□□□□ 0.38
MMP28Q9H239 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.45■□□□□ 0.38
MMP28Q9H239 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.45■□□□□ 0.38
MMP28Q9H239 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.45■□□□□ 0.38
MMP28Q9H239 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
MMP28Q9H239 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.45■□□□□ 0.38
MMP28Q9H239 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.45■□□□□ 0.38
MMP28Q9H239 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MMP28Q9H239 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
MMP28Q9H239 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.44■□□□□ 0.38
MMP28Q9H239 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
MMP28Q9H239 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
MMP28Q9H239 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
MMP28Q9H239 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
MMP28Q9H239 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.44■□□□□ 0.38
MMP28Q9H239 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 AL162430.1-201ENST00000480705 870 ntBASIC17.44■□□□□ 0.38
MMP28Q9H239 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
MMP28Q9H239 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
MMP28Q9H239 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
MMP28Q9H239 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.44■□□□□ 0.38
MMP28Q9H239 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
MMP28Q9H239 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.43■□□□□ 0.38
MMP28Q9H239 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.43■□□□□ 0.38
MMP28Q9H239 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
MMP28Q9H239 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC17.43■□□□□ 0.38
MMP28Q9H239 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
MMP28Q9H239 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
MMP28Q9H239 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 AC104581.1-202ENST00000635932 2618 ntBASIC17.43■□□□□ 0.38
MMP28Q9H239 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MMP28Q9H239 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
MMP28Q9H239 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MMP28Q9H239 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.42■□□□□ 0.38
MMP28Q9H239 AP006587.3-201ENST00000525742 1516 ntBASIC17.42■□□□□ 0.38
MMP28Q9H239 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
MMP28Q9H239 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MMP28Q9H239 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
MMP28Q9H239 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.42■□□□□ 0.38
MMP28Q9H239 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MMP28Q9H239 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.42■□□□□ 0.38
MMP28Q9H239 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MMP28Q9H239 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.42■□□□□ 0.38
MMP28Q9H239 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MMP28Q9H239 AC020916.1-201ENST00000587762 1774 ntBASIC17.42■□□□□ 0.38
MMP28Q9H239 TREX1-205ENST00000625293 1783 ntBASIC17.42■□□□□ 0.38
MMP28Q9H239 AP000997.3-201ENST00000623333 2250 ntBASIC17.42■□□□□ 0.38
MMP28Q9H239 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
MMP28Q9H239 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
MMP28Q9H239 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
MMP28Q9H239 AL032819.2-201ENST00000624543 2162 ntBASIC17.42■□□□□ 0.38
MMP28Q9H239 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MMP28Q9H239 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
MMP28Q9H239 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.42■□□□□ 0.38
MMP28Q9H239 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MMP28Q9H239 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.41■□□□□ 0.38
MMP28Q9H239 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
MMP28Q9H239 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MMP28Q9H239 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms