Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC113Q9H0I3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC113Q9H0I3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CCDC113Q9H0I3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 AC124283.5-201ENST00000624661 1809 ntBASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 HLA-G-202ENST00000376815 851 ntBASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 HLA-G-203ENST00000376818 1127 ntBASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 MTDHP1-201ENST00000605323 784 ntBASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 AC020907.5-201ENST00000624372 1936 ntBASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
CCDC113Q9H0I3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 AP005212.1-201ENST00000581547 1997 ntBASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC113Q9H0I3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 SMG8-203ENST00000578922 2178 ntBASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC113Q9H0I3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 AL359736.2-201ENST00000621992 437 ntBASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC113Q9H0I3 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 AC142381.4-202ENST00000563973 229 ntBASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.91■■□□□ 1.1
CCDC113Q9H0I3 FEM1AP1-201ENST00000431297 1995 ntBASIC21.9■■□□□ 1.1
CCDC113Q9H0I3 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms