Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28BQ9BUN5 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28BQ9BUN5 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC28BQ9BUN5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC28BQ9BUN5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.27■□□□□ 0.67
CCDC28BQ9BUN5 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC28BQ9BUN5 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC28BQ9BUN5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC28BQ9BUN5 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.27■□□□□ 0.67
CCDC28BQ9BUN5 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 AL032819.2-201ENST00000624543 2162 ntBASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28BQ9BUN5 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 PTBP1P-201ENST00000554374 1601 ntBASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC28BQ9BUN5 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms