Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX3-1Q99801 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
NKX3-1Q99801 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NKX3-1Q99801 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
NKX3-1Q99801 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
NKX3-1Q99801 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.27■□□□□ 0.35
NKX3-1Q99801 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NKX3-1Q99801 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NKX3-1Q99801 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 TMEM179-206ENST00000616017 1645 ntBASIC17.26■□□□□ 0.35
NKX3-1Q99801 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NKX3-1Q99801 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NKX3-1Q99801 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 AL137784.2-201ENST00000607332 1000 ntBASIC17.26■□□□□ 0.35
NKX3-1Q99801 FAM21FP-204ENST00000608637 956 ntBASIC17.26■□□□□ 0.35
NKX3-1Q99801 IKBKGP1-201ENST00000612193 1073 ntBASIC17.26■□□□□ 0.35
NKX3-1Q99801 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
NKX3-1Q99801 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NKX3-1Q99801 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
NKX3-1Q99801 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
NKX3-1Q99801 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.25■□□□□ 0.35
NKX3-1Q99801 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.25■□□□□ 0.35
NKX3-1Q99801 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.25■□□□□ 0.35
NKX3-1Q99801 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.25■□□□□ 0.35
NKX3-1Q99801 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.25■□□□□ 0.35
NKX3-1Q99801 AC022517.1-201ENST00000592429 346 ntBASIC17.25■□□□□ 0.35
NKX3-1Q99801 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.25■□□□□ 0.35
NKX3-1Q99801 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NKX3-1Q99801 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 GALNS-213ENST00000569433 723 ntTSL 3 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
NKX3-1Q99801 AC020763.4-201ENST00000623414 4170 ntBASIC17.24■□□□□ 0.35
NKX3-1Q99801 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NKX3-1Q99801 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NKX3-1Q99801 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NKX3-1Q99801 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NKX3-1Q99801 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.23■□□□□ 0.35
NKX3-1Q99801 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms