Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 AL023803.3-201ENST00000615559 522 ntBASIC17.45■□□□□ 0.38
COL12A1Q99715 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL12A1Q99715 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.45■□□□□ 0.38
COL12A1Q99715 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.45■□□□□ 0.38
COL12A1Q99715 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
COL12A1Q99715 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL12A1Q99715 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.45■□□□□ 0.38
COL12A1Q99715 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.45■□□□□ 0.38
COL12A1Q99715 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL12A1Q99715 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL12A1Q99715 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.44■□□□□ 0.38
COL12A1Q99715 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC17.44■□□□□ 0.38
COL12A1Q99715 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
COL12A1Q99715 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.44■□□□□ 0.38
COL12A1Q99715 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL12A1Q99715 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL12A1Q99715 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.44■□□□□ 0.38
COL12A1Q99715 AL355385.1-201ENST00000606123 409 ntBASIC17.44■□□□□ 0.38
COL12A1Q99715 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.44■□□□□ 0.38
COL12A1Q99715 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.44■□□□□ 0.38
COL12A1Q99715 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 SLC25A1P2-201ENST00000430693 912 ntBASIC17.44■□□□□ 0.38
COL12A1Q99715 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
COL12A1Q99715 NPAP1P7-201ENST00000613027 823 ntBASIC17.44■□□□□ 0.38
COL12A1Q99715 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL12A1Q99715 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.43■□□□□ 0.38
COL12A1Q99715 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
COL12A1Q99715 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.43■□□□□ 0.38
COL12A1Q99715 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL12A1Q99715 AP002469.2-201ENST00000531724 424 ntBASIC17.43■□□□□ 0.38
COL12A1Q99715 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL12A1Q99715 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL12A1Q99715 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL12A1Q99715 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL12A1Q99715 AC007663.1-201ENST00000438948 1240 ntBASIC17.43■□□□□ 0.38
COL12A1Q99715 HOMER2P1-201ENST00000455653 964 ntBASIC17.43■□□□□ 0.38
COL12A1Q99715 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.43■□□□□ 0.38
COL12A1Q99715 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL12A1Q99715 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL12A1Q99715 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL12A1Q99715 KRT18P13-201ENST00000400056 1290 ntBASIC17.42■□□□□ 0.38
COL12A1Q99715 ATP5G2P1-201ENST00000433580 426 ntBASIC17.42■□□□□ 0.38
COL12A1Q99715 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.42■□□□□ 0.38
COL12A1Q99715 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL12A1Q99715 AC092338.2-201ENST00000568827 1415 ntBASIC17.42■□□□□ 0.38
COL12A1Q99715 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.42■□□□□ 0.38
COL12A1Q99715 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL12A1Q99715 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.42■□□□□ 0.38
COL12A1Q99715 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL12A1Q99715 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL12A1Q99715 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.42■□□□□ 0.38
COL12A1Q99715 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.42■□□□□ 0.38
COL12A1Q99715 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL12A1Q99715 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL12A1Q99715 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL12A1Q99715 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL12A1Q99715 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL12A1Q99715 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.41■□□□□ 0.38
COL12A1Q99715 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.41■□□□□ 0.38
COL12A1Q99715 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.41■□□□□ 0.38
COL12A1Q99715 AL441883.1-201ENST00000566170 1045 ntBASIC17.41■□□□□ 0.38
COL12A1Q99715 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.41■□□□□ 0.38
COL12A1Q99715 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
COL12A1Q99715 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
COL12A1Q99715 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 AL031008.1-201ENST00000619963 541 ntBASIC17.41■□□□□ 0.38
COL12A1Q99715 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
COL12A1Q99715 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.41■□□□□ 0.38
COL12A1Q99715 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.41■□□□□ 0.38
COL12A1Q99715 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.41■□□□□ 0.38
COL12A1Q99715 AL512604.3-201ENST00000569583 964 ntBASIC17.41■□□□□ 0.38
COL12A1Q99715 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL12A1Q99715 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms