Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 PRKY-204ENST00000533551 1019 ntBASIC17.8■□□□□ 0.44
CPNE4Q96A23 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 AL121829.2-201ENST00000620908 328 ntBASIC17.8■□□□□ 0.44
CPNE4Q96A23 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 AL162377.1-201ENST00000618844 1793 ntBASIC17.8■□□□□ 0.44
CPNE4Q96A23 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
CPNE4Q96A23 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPNE4Q96A23 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPNE4Q96A23 LINC01006-201ENST00000333319 2292 ntBASIC17.79■□□□□ 0.44
CPNE4Q96A23 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPNE4Q96A23 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPNE4Q96A23 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 AL391422.3-201ENST00000603791 2761 ntBASIC17.79■□□□□ 0.44
CPNE4Q96A23 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPNE4Q96A23 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPNE4Q96A23 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPNE4Q96A23 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.79■□□□□ 0.44
CPNE4Q96A23 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CPNE4Q96A23 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPNE4Q96A23 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPNE4Q96A23 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CPNE4Q96A23 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CPNE4Q96A23 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPNE4Q96A23 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPNE4Q96A23 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPNE4Q96A23 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CPNE4Q96A23 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPNE4Q96A23 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CPNE4Q96A23 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CPNE4Q96A23 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 PHGDH-210ENST00000641115 1638 ntBASIC17.77■□□□□ 0.44
CPNE4Q96A23 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 PRORSD1P-201ENST00000295112 541 ntBASIC17.77■□□□□ 0.44
CPNE4Q96A23 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CPNE4Q96A23 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CPNE4Q96A23 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CPNE4Q96A23 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.77■□□□□ 0.43
CPNE4Q96A23 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CPNE4Q96A23 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CPNE4Q96A23 AC124283.5-201ENST00000624661 1809 ntBASIC17.77■□□□□ 0.43
CPNE4Q96A23 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CPNE4Q96A23 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CPNE4Q96A23 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.76■□□□□ 0.43
CPNE4Q96A23 LINC01521-201ENST00000504184 1943 ntBASIC17.76■□□□□ 0.43
CPNE4Q96A23 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.76■□□□□ 0.43
CPNE4Q96A23 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CPNE4Q96A23 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.76■□□□□ 0.43
CPNE4Q96A23 AL157384.1-201ENST00000445995 2473 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms