Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 AC018553.1-201ENST00000616682 1458 ntBASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 AL390719.1-204ENST00000412397 1219 ntBASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM3Q8TF72 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.27■□□□□ 0.83
SHROOM3Q8TF72 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHROOM3Q8TF72 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 SOX15-203ENST00000570788 1093 ntBASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 AC069544.1-201ENST00000609399 999 ntBASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 ECEL1P3-201ENST00000427961 737 ntBASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM3Q8TF72 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 KRT16P6-202ENST00000425692 1426 ntBASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.25■□□□□ 0.83
SHROOM3Q8TF72 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 AC006557.6-201ENST00000623071 864 ntBASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHROOM3Q8TF72 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 RPS2P4-201ENST00000476944 856 ntBASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SHROOM3Q8TF72 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms