Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 PRR31-201ENST00000371629 978 ntTSL 2 BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USHBP1Q8N6Y0 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 AC011506.1-201ENST00000474329 610 ntBASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 CFL2-205ENST00000555765 632 ntTSL 2 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC26.24■■□□□ 1.79
USHBP1Q8N6Y0 AC073508.3-201ENST00000619697 1419 ntBASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 SMG8-203ENST00000578922 2178 ntBASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 CRAT-202ENST00000393384 973 ntTSL 2 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 PPP1R14BP5-201ENST00000440334 435 ntBASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 SLC25A3P1-201ENST00000443844 931 ntBASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 NT5C-211ENST00000582170 653 ntTSL 3 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 AL031985.4-201ENST00000642138 673 ntBASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USHBP1Q8N6Y0 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 CBFB-203ENST00000561924 584 ntTSL 5 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USHBP1Q8N6Y0 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 KRT18P22-201ENST00000402024 1347 ntBASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 B3GAT3P1-201ENST00000471720 806 ntBASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 AC010203.1-204ENST00000548782 407 ntBASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 AL445675.2-201ENST00000620291 557 ntBASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 AC092720.2-201ENST00000602388 1665 ntBASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC26.21■■□□□ 1.79
USHBP1Q8N6Y0 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
USHBP1Q8N6Y0 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
USHBP1Q8N6Y0 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC26.2■■□□□ 1.79
USHBP1Q8N6Y0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
USHBP1Q8N6Y0 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC26.2■■□□□ 1.79
USHBP1Q8N6Y0 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms