Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CLIP4Q8N3C7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 BID-214ENST00000617586 542 ntTSL 5 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP4Q8N3C7 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 MCRIP2P1-201ENST00000394346 511 ntBASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 AC022517.1-201ENST00000592429 346 ntBASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 AC100791.3-201ENST00000617619 330 ntBASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 BX119927.1-201ENST00000636596 1552 ntBASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CLIP4Q8N3C7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 AC098818.2-201ENST00000564925 2320 ntBASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 AC125437.2-201ENST00000625180 2167 ntBASIC18.52■□□□□ 0.56
CLIP4Q8N3C7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLIP4Q8N3C7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CLIP4Q8N3C7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLIP4Q8N3C7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.55
CLIP4Q8N3C7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLIP4Q8N3C7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 AC018445.3-201ENST00000624177 1945 ntBASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 AC116562.4-201ENST00000641316 2276 ntBASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLIP4Q8N3C7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms