Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AL445675.2-201ENST00000620291 557 ntBASIC16.64■□□□□ 0.25
VPS13CQ709C8 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13CQ709C8 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13CQ709C8 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13CQ709C8 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 AC091390.4-202ENST00000476426 537 ntBASIC16.63■□□□□ 0.25
VPS13CQ709C8 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 LIN28AP1-201ENST00000429574 405 ntBASIC16.63■□□□□ 0.25
VPS13CQ709C8 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS13CQ709C8 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 YBX1P2-201ENST00000489612 999 ntBASIC16.63■□□□□ 0.25
VPS13CQ709C8 FAM86EP-206ENST00000510506 987 ntBASIC16.63■□□□□ 0.25
VPS13CQ709C8 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13CQ709C8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13CQ709C8 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS13CQ709C8 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13CQ709C8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13CQ709C8 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.62■□□□□ 0.25
VPS13CQ709C8 AC130371.2-201ENST00000619443 611 ntBASIC16.62■□□□□ 0.25
VPS13CQ709C8 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13CQ709C8 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13CQ709C8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13CQ709C8 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS13CQ709C8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
VPS13CQ709C8 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13CQ709C8 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13CQ709C8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13CQ709C8 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13CQ709C8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13CQ709C8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 SLC25A1P4-201ENST00000567977 778 ntBASIC16.61■□□□□ 0.25
VPS13CQ709C8 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13CQ709C8 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
VPS13CQ709C8 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.6■□□□□ 0.25
VPS13CQ709C8 HCG4P8-203ENST00000443049 980 ntBASIC16.6■□□□□ 0.25
VPS13CQ709C8 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 AC116407.4-201ENST00000623319 1061 ntBASIC16.6■□□□□ 0.25
VPS13CQ709C8 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS13CQ709C8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS13CQ709C8 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13CQ709C8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VPS13CQ709C8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS13CQ709C8 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms