Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
KRT39Q6A163 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.45■■□□□ 1.02
KRT39Q6A163 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
KRT39Q6A163 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT39Q6A163 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT39Q6A163 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT39Q6A163 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT39Q6A163 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
KRT39Q6A163 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT39Q6A163 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
KRT39Q6A163 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.44■■□□□ 1.02
KRT39Q6A163 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
KRT39Q6A163 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT39Q6A163 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
KRT39Q6A163 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT39Q6A163 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.43■■□□□ 1.02
KRT39Q6A163 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.43■■□□□ 1.02
KRT39Q6A163 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.43■■□□□ 1.02
KRT39Q6A163 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.43■■□□□ 1.02
KRT39Q6A163 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.43■■□□□ 1.02
KRT39Q6A163 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.43■■□□□ 1.02
KRT39Q6A163 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.43■■□□□ 1.02
KRT39Q6A163 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
KRT39Q6A163 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
KRT39Q6A163 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.42■■□□□ 1.02
KRT39Q6A163 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.42■■□□□ 1.02
KRT39Q6A163 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.42■■□□□ 1.02
KRT39Q6A163 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.42■■□□□ 1.02
KRT39Q6A163 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.42■■□□□ 1.02
KRT39Q6A163 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
KRT39Q6A163 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.42■■□□□ 1.02
KRT39Q6A163 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.42■■□□□ 1.02
KRT39Q6A163 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.42■■□□□ 1.02
KRT39Q6A163 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.42■■□□□ 1.02
KRT39Q6A163 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.42■■□□□ 1.02
KRT39Q6A163 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
KRT39Q6A163 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.41■■□□□ 1.02
KRT39Q6A163 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.41■■□□□ 1.02
KRT39Q6A163 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.41■■□□□ 1.02
KRT39Q6A163 AC116351.2-201ENST00000606540 1585 ntBASIC21.41■■□□□ 1.02
KRT39Q6A163 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.41■■□□□ 1.02
KRT39Q6A163 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
KRT39Q6A163 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.41■■□□□ 1.02
KRT39Q6A163 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.41■■□□□ 1.02
KRT39Q6A163 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.41■■□□□ 1.02
KRT39Q6A163 SOX15-203ENST00000570788 1093 ntBASIC21.41■■□□□ 1.02
KRT39Q6A163 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.41■■□□□ 1.02
KRT39Q6A163 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.41■■□□□ 1.02
KRT39Q6A163 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 AC125437.2-201ENST00000625180 2167 ntBASIC21.41■■□□□ 1.02
KRT39Q6A163 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
KRT39Q6A163 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.41■■□□□ 1.02
KRT39Q6A163 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.4■■□□□ 1.02
KRT39Q6A163 AC018553.1-201ENST00000616682 1458 ntBASIC21.4■■□□□ 1.02
KRT39Q6A163 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.4■■□□□ 1.02
KRT39Q6A163 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
KRT39Q6A163 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
KRT39Q6A163 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.4■■□□□ 1.02
KRT39Q6A163 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.4■■□□□ 1.02
KRT39Q6A163 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
KRT39Q6A163 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms