Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX4Q33E94 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX4Q33E94 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.42■□□□□ 0.54
RFX4Q33E94 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RFX4Q33E94 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RFX4Q33E94 KRT18P20-201ENST00000548986 1279 ntBASIC18.42■□□□□ 0.54
RFX4Q33E94 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.42■□□□□ 0.54
RFX4Q33E94 CCDC92B-201ENST00000575506 885 ntBASIC18.42■□□□□ 0.54
RFX4Q33E94 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.42■□□□□ 0.54
RFX4Q33E94 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.42■□□□□ 0.54
RFX4Q33E94 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RFX4Q33E94 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX4Q33E94 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX4Q33E94 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX4Q33E94 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
RFX4Q33E94 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RFX4Q33E94 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX4Q33E94 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX4Q33E94 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX4Q33E94 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RFX4Q33E94 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RFX4Q33E94 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RFX4Q33E94 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RFX4Q33E94 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX4Q33E94 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX4Q33E94 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RFX4Q33E94 AC123595.1-201ENST00000440769 1046 ntBASIC18.41■□□□□ 0.54
RFX4Q33E94 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.41■□□□□ 0.54
RFX4Q33E94 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RFX4Q33E94 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
RFX4Q33E94 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.41■□□□□ 0.54
RFX4Q33E94 AC009237.14-201ENST00000609975 1594 ntBASIC18.41■□□□□ 0.54
RFX4Q33E94 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX4Q33E94 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX4Q33E94 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RFX4Q33E94 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX4Q33E94 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.4■□□□□ 0.54
RFX4Q33E94 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.4■□□□□ 0.54
RFX4Q33E94 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.4■□□□□ 0.54
RFX4Q33E94 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.4■□□□□ 0.54
RFX4Q33E94 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.4■□□□□ 0.54
RFX4Q33E94 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.4■□□□□ 0.54
RFX4Q33E94 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.4■□□□□ 0.54
RFX4Q33E94 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.4■□□□□ 0.54
RFX4Q33E94 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.4■□□□□ 0.54
RFX4Q33E94 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.4■□□□□ 0.54
RFX4Q33E94 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.4■□□□□ 0.54
RFX4Q33E94 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.4■□□□□ 0.54
RFX4Q33E94 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX4Q33E94 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.39■□□□□ 0.54
RFX4Q33E94 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RFX4Q33E94 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RFX4Q33E94 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX4Q33E94 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
RFX4Q33E94 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFX4Q33E94 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RFX4Q33E94 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.39■□□□□ 0.53
RFX4Q33E94 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.39■□□□□ 0.53
RFX4Q33E94 TERF1P2-201ENST00000583350 1212 ntBASIC18.39■□□□□ 0.53
RFX4Q33E94 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.39■□□□□ 0.53
RFX4Q33E94 NEFHP1-201ENST00000412845 2629 ntBASIC18.39■□□□□ 0.53
RFX4Q33E94 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX4Q33E94 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
RFX4Q33E94 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX4Q33E94 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.39■□□□□ 0.53
RFX4Q33E94 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX4Q33E94 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX4Q33E94 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX4Q33E94 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX4Q33E94 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFX4Q33E94 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX4Q33E94 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFX4Q33E94 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFX4Q33E94 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
RFX4Q33E94 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX4Q33E94 AC243732.1-201ENST00000612648 864 ntBASIC18.38■□□□□ 0.53
RFX4Q33E94 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
RFX4Q33E94 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX4Q33E94 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
RFX4Q33E94 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX4Q33E94 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX4Q33E94 AL032819.2-201ENST00000624543 2162 ntBASIC18.38■□□□□ 0.53
RFX4Q33E94 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX4Q33E94 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.38■□□□□ 0.53
RFX4Q33E94 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX4Q33E94 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.38■□□□□ 0.53
RFX4Q33E94 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms