Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PEX3P56589 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.9■■□□□ 1.1
PEX3P56589 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.9■■□□□ 1.1
PEX3P56589 RN7SL471P-201ENST00000580476 299 ntBASIC21.9■■□□□ 1.1
PEX3P56589 MTDHP1-201ENST00000605323 784 ntBASIC21.9■■□□□ 1.1
PEX3P56589 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
PEX3P56589 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.9■■□□□ 1.1
PEX3P56589 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PEX3P56589 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.9■■□□□ 1.1
PEX3P56589 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PEX3P56589 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PEX3P56589 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.9■■□□□ 1.1
PEX3P56589 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
PEX3P56589 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
PEX3P56589 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
PEX3P56589 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PEX3P56589 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.89■■□□□ 1.09
PEX3P56589 PHGDH-210ENST00000641115 1638 ntBASIC21.89■■□□□ 1.09
PEX3P56589 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.89■■□□□ 1.09
PEX3P56589 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.89■■□□□ 1.09
PEX3P56589 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.89■■□□□ 1.09
PEX3P56589 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 AL121829.2-201ENST00000620908 328 ntBASIC21.89■■□□□ 1.09
PEX3P56589 AL121906.2-201ENST00000621597 723 ntBASIC21.89■■□□□ 1.09
PEX3P56589 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.89■■□□□ 1.09
PEX3P56589 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.89■■□□□ 1.09
PEX3P56589 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PEX3P56589 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PEX3P56589 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PEX3P56589 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
PEX3P56589 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PEX3P56589 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
PEX3P56589 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.88■■□□□ 1.09
PEX3P56589 AC098590.1-201ENST00000468126 897 ntBASIC21.88■■□□□ 1.09
PEX3P56589 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.88■■□□□ 1.09
PEX3P56589 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PEX3P56589 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
PEX3P56589 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PEX3P56589 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
PEX3P56589 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PEX3P56589 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PEX3P56589 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.87■■□□□ 1.09
PEX3P56589 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PEX3P56589 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.87■■□□□ 1.09
PEX3P56589 C1QBPP2-201ENST00000528754 825 ntBASIC21.87■■□□□ 1.09
PEX3P56589 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.87■■□□□ 1.09
PEX3P56589 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.87■■□□□ 1.09
PEX3P56589 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PEX3P56589 AL023875.1-201ENST00000640777 796 ntBASIC21.87■■□□□ 1.09
PEX3P56589 AC018553.1-201ENST00000616682 1458 ntBASIC21.87■■□□□ 1.09
PEX3P56589 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.87■■□□□ 1.09
PEX3P56589 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PEX3P56589 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PEX3P56589 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PEX3P56589 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PEX3P56589 AC116351.2-201ENST00000606540 1585 ntBASIC21.87■■□□□ 1.09
PEX3P56589 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 PCDHAC2-203ENST00000615316 3011 ntBASIC21.86■■□□□ 1.09
PEX3P56589 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
PEX3P56589 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.86■■□□□ 1.09
PEX3P56589 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.86■■□□□ 1.09
PEX3P56589 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
PEX3P56589 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.86■■□□□ 1.09
PEX3P56589 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.86■■□□□ 1.09
PEX3P56589 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 TCF3P1-201ENST00000423021 1937 ntBASIC21.86■■□□□ 1.09
PEX3P56589 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PEX3P56589 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
PEX3P56589 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.85■■□□□ 1.09
PEX3P56589 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.85■■□□□ 1.09
PEX3P56589 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.85■■□□□ 1.09
PEX3P56589 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PEX3P56589 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.85■■□□□ 1.09
PEX3P56589 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
PEX3P56589 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
PEX3P56589 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms