Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC27.64■■■□□ 2.02
MSH6P52701 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC27.64■■■□□ 2.02
MSH6P52701 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC27.64■■■□□ 2.02
MSH6P52701 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC27.64■■■□□ 2.02
MSH6P52701 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC27.64■■■□□ 2.02
MSH6P52701 IRF5-214ENST00000613821 595 ntTSL 5 BASIC27.64■■■□□ 2.02
MSH6P52701 AC011298.2-201ENST00000617989 482 ntBASIC27.64■■■□□ 2.02
MSH6P52701 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC27.64■■■□□ 2.02
MSH6P52701 AL031432.5-201ENST00000641059 760 ntBASIC27.64■■■□□ 2.02
MSH6P52701 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC27.64■■■□□ 2.01
MSH6P52701 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC27.64■■■□□ 2.01
MSH6P52701 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
MSH6P52701 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
MSH6P52701 TERT-206ENST00000508104 2486 ntTSL 5 BASIC27.63■■■□□ 2.01
MSH6P52701 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC27.63■■■□□ 2.01
MSH6P52701 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC27.63■■■□□ 2.01
MSH6P52701 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC27.63■■■□□ 2.01
MSH6P52701 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC27.63■■■□□ 2.01
MSH6P52701 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC27.63■■■□□ 2.01
MSH6P52701 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC27.63■■■□□ 2.01
MSH6P52701 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC27.63■■■□□ 2.01
MSH6P52701 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC27.63■■■□□ 2.01
MSH6P52701 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC27.63■■■□□ 2.01
MSH6P52701 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC27.63■■■□□ 2.01
MSH6P52701 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
MSH6P52701 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC27.62■■■□□ 2.01
MSH6P52701 AC246785.2-201ENST00000432512 513 ntBASIC27.62■■■□□ 2.01
MSH6P52701 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC27.62■■■□□ 2.01
MSH6P52701 AC008622.2-201ENST00000617006 1229 ntBASIC27.62■■■□□ 2.01
MSH6P52701 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC27.62■■■□□ 2.01
MSH6P52701 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC27.62■■■□□ 2.01
MSH6P52701 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC27.62■■■□□ 2.01
MSH6P52701 AC092338.2-201ENST00000568827 1415 ntBASIC27.62■■■□□ 2.01
MSH6P52701 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
MSH6P52701 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC27.62■■■□□ 2.01
MSH6P52701 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
MSH6P52701 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC27.62■■■□□ 2.01
MSH6P52701 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
MSH6P52701 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC27.61■■■□□ 2.01
MSH6P52701 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC27.61■■■□□ 2.01
MSH6P52701 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
MSH6P52701 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
MSH6P52701 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
MSH6P52701 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
MSH6P52701 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
MSH6P52701 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
MSH6P52701 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC27.61■■■□□ 2.01
MSH6P52701 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC27.6■■■□□ 2.01
MSH6P52701 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC27.6■■■□□ 2.01
MSH6P52701 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC27.6■■■□□ 2.01
MSH6P52701 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 PTK2-216ENST00000519881 863 ntTSL 3 BASIC27.6■■■□□ 2.01
MSH6P52701 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC27.6■■■□□ 2.01
MSH6P52701 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC27.6■■■□□ 2.01
MSH6P52701 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC27.6■■■□□ 2.01
MSH6P52701 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC27.6■■■□□ 2.01
MSH6P52701 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC27.6■■■□□ 2.01
MSH6P52701 YBX1P10-201ENST00000444752 975 ntBASIC27.6■■■□□ 2.01
MSH6P52701 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC27.6■■■□□ 2.01
MSH6P52701 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC27.6■■■□□ 2.01
MSH6P52701 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
MSH6P52701 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
MSH6P52701 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
MSH6P52701 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
MSH6P52701 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
MSH6P52701 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
MSH6P52701 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
MSH6P52701 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC27.59■■■□□ 2.01
MSH6P52701 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC27.59■■■□□ 2.01
MSH6P52701 AC008040.2-201ENST00000461049 708 ntBASIC27.59■■■□□ 2.01
MSH6P52701 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC27.59■■■□□ 2.01
MSH6P52701 AL441883.1-201ENST00000566170 1045 ntBASIC27.59■■■□□ 2.01
MSH6P52701 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
MSH6P52701 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC27.59■■■□□ 2.01
MSH6P52701 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC27.59■■■□□ 2.01
MSH6P52701 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC27.58■■■□□ 2.01
MSH6P52701 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC27.58■■■□□ 2.01
MSH6P52701 STK25-204ENST00000405585 1643 ntTSL 2 BASIC27.58■■■□□ 2.01
MSH6P52701 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC27.58■■■□□ 2.01
MSH6P52701 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC27.58■■■□□ 2.01
MSH6P52701 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC27.58■■■□□ 2.01
MSH6P52701 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC27.58■■■□□ 2.01
MSH6P52701 ME2-206ENST00000638410 2289 ntTSL 5 BASIC27.58■■■□□ 2.01
MSH6P52701 ME2-210ENST00000639255 2262 ntTSL 5 BASIC27.58■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms