Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL12P48061 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL12P48061 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL12P48061 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL12P48061 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.84■□□□□ 0.77
CXCL12P48061 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.84■□□□□ 0.77
CXCL12P48061 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 AC233723.2-201ENST00000623798 2106 ntBASIC19.84■□□□□ 0.77
CXCL12P48061 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CXCL12P48061 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CXCL12P48061 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 AC116351.2-201ENST00000606540 1585 ntBASIC19.84■□□□□ 0.77
CXCL12P48061 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CXCL12P48061 AC092647.4-201ENST00000457211 535 ntBASIC19.84■□□□□ 0.77
CXCL12P48061 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.84■□□□□ 0.77
CXCL12P48061 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.84■□□□□ 0.77
CXCL12P48061 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.84■□□□□ 0.77
CXCL12P48061 AP000550.4-202ENST00000639755 178 ntBASIC19.84■□□□□ 0.77
CXCL12P48061 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CXCL12P48061 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL12P48061 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
CXCL12P48061 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.83■□□□□ 0.77
CXCL12P48061 TFP1-202ENST00000475455 1573 ntBASIC19.83■□□□□ 0.77
CXCL12P48061 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CXCL12P48061 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CXCL12P48061 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CXCL12P48061 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CXCL12P48061 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CXCL12P48061 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CXCL12P48061 YBX1P2-201ENST00000489612 999 ntBASIC19.83■□□□□ 0.77
CXCL12P48061 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CXCL12P48061 AC011298.2-201ENST00000617989 482 ntBASIC19.83■□□□□ 0.77
CXCL12P48061 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CXCL12P48061 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.83■□□□□ 0.76
CXCL12P48061 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CXCL12P48061 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.83■□□□□ 0.76
CXCL12P48061 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.83■□□□□ 0.76
CXCL12P48061 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CXCL12P48061 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CXCL12P48061 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CXCL12P48061 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CXCL12P48061 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CXCL12P48061 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CXCL12P48061 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.82■□□□□ 0.76
CXCL12P48061 COX11P1-201ENST00000489116 835 ntBASIC19.82■□□□□ 0.76
CXCL12P48061 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.82■□□□□ 0.76
CXCL12P48061 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.82■□□□□ 0.76
CXCL12P48061 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CXCL12P48061 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.82■□□□□ 0.76
CXCL12P48061 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.82■□□□□ 0.76
CXCL12P48061 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
CXCL12P48061 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.82■□□□□ 0.76
CXCL12P48061 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
CXCL12P48061 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CXCL12P48061 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CXCL12P48061 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
CXCL12P48061 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.81■□□□□ 0.76
CXCL12P48061 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.81■□□□□ 0.76
CXCL12P48061 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.81■□□□□ 0.76
CXCL12P48061 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CXCL12P48061 SLC25A1P2-201ENST00000430693 912 ntBASIC19.81■□□□□ 0.76
CXCL12P48061 TPM4P1-201ENST00000436100 807 ntBASIC19.81■□□□□ 0.76
CXCL12P48061 AC009947.2-201ENST00000444014 672 ntBASIC19.81■□□□□ 0.76
CXCL12P48061 FAM207BP-201ENST00000447172 505 ntBASIC19.81■□□□□ 0.76
CXCL12P48061 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.81■□□□□ 0.76
CXCL12P48061 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.81■□□□□ 0.76
CXCL12P48061 RCC2P6-201ENST00000526625 1557 ntBASIC19.81■□□□□ 0.76
CXCL12P48061 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
CXCL12P48061 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.81■□□□□ 0.76
CXCL12P48061 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL12P48061 AL049796.1-201ENST00000565336 1766 ntBASIC19.8■□□□□ 0.76
CXCL12P48061 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 ECEL1P1-201ENST00000373592 1742 ntBASIC19.8■□□□□ 0.76
CXCL12P48061 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 AC004951.3-201ENST00000418645 1148 ntBASIC19.8■□□□□ 0.76
CXCL12P48061 MFAP1P1-201ENST00000442257 1255 ntBASIC19.8■□□□□ 0.76
CXCL12P48061 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms