Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
TNFRSF4P43489 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.03■□□□□ 0.8
TNFRSF4P43489 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.03■□□□□ 0.8
TNFRSF4P43489 AC010947.1-201ENST00000623454 693 ntBASIC20.03■□□□□ 0.8
TNFRSF4P43489 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.03■□□□□ 0.8
TNFRSF4P43489 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TNFRSF4P43489 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
TNFRSF4P43489 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFRSF4P43489 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 AC026310.3-201ENST00000625186 2373 ntBASIC20.02■□□□□ 0.8
TNFRSF4P43489 PHGDH-210ENST00000641115 1638 ntBASIC20.02■□□□□ 0.8
TNFRSF4P43489 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFRSF4P43489 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TNFRSF4P43489 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 AC131212.4-201ENST00000623606 975 ntBASIC20.02■□□□□ 0.8
TNFRSF4P43489 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TNFRSF4P43489 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFRSF4P43489 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFRSF4P43489 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
TNFRSF4P43489 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
TNFRSF4P43489 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
TNFRSF4P43489 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
TNFRSF4P43489 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
TNFRSF4P43489 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFRSF4P43489 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.01■□□□□ 0.79
TNFRSF4P43489 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFRSF4P43489 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.01■□□□□ 0.79
TNFRSF4P43489 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFRSF4P43489 AC005521.1-201ENST00000393351 872 ntBASIC20.01■□□□□ 0.79
TNFRSF4P43489 MESTP1-201ENST00000404287 994 ntBASIC20.01■□□□□ 0.79
TNFRSF4P43489 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.01■□□□□ 0.79
TNFRSF4P43489 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.01■□□□□ 0.79
TNFRSF4P43489 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.01■□□□□ 0.79
TNFRSF4P43489 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFRSF4P43489 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.01■□□□□ 0.79
TNFRSF4P43489 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFRSF4P43489 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFRSF4P43489 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFRSF4P43489 GOLGA6L3-201ENST00000507199 1679 ntBASIC20■□□□□ 0.79
TNFRSF4P43489 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
TNFRSF4P43489 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20■□□□□ 0.79
TNFRSF4P43489 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
TNFRSF4P43489 AC113347.1-201ENST00000413321 391 ntBASIC20■□□□□ 0.79
TNFRSF4P43489 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
TNFRSF4P43489 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TNFRSF4P43489 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20■□□□□ 0.79
TNFRSF4P43489 DGCR10-201ENST00000609839 495 ntBASIC20■□□□□ 0.79
TNFRSF4P43489 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TNFRSF4P43489 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20■□□□□ 0.79
TNFRSF4P43489 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
TNFRSF4P43489 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TNFRSF4P43489 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TNFRSF4P43489 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TNFRSF4P43489 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.99■□□□□ 0.79
TNFRSF4P43489 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.99■□□□□ 0.79
TNFRSF4P43489 AC004980.1-204ENST00000429707 299 ntBASIC19.99■□□□□ 0.79
TNFRSF4P43489 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.99■□□□□ 0.79
TNFRSF4P43489 B3GAT3P1-201ENST00000471720 806 ntBASIC19.99■□□□□ 0.79
TNFRSF4P43489 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TNFRSF4P43489 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.99■□□□□ 0.79
TNFRSF4P43489 AP005242.2-201ENST00000580065 1175 ntBASIC19.99■□□□□ 0.79
TNFRSF4P43489 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.99■□□□□ 0.79
TNFRSF4P43489 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TNFRSF4P43489 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.98■□□□□ 0.79
TNFRSF4P43489 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TNFRSF4P43489 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
TNFRSF4P43489 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.98■□□□□ 0.79
TNFRSF4P43489 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.98■□□□□ 0.79
TNFRSF4P43489 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.98■□□□□ 0.79
TNFRSF4P43489 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TNFRSF4P43489 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.98■□□□□ 0.79
TNFRSF4P43489 AL049597.2-201ENST00000565575 961 ntBASIC19.98■□□□□ 0.79
TNFRSF4P43489 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.98■□□□□ 0.79
TNFRSF4P43489 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.98■□□□□ 0.79
TNFRSF4P43489 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.98■□□□□ 0.79
TNFRSF4P43489 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TNFRSF4P43489 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms