Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.23■□□□□ 0.67
HNF4AP41235 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.23■□□□□ 0.67
HNF4AP41235 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 AC091874.3-201ENST00000512672 1195 ntBASIC19.23■□□□□ 0.67
HNF4AP41235 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
HNF4AP41235 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.23■□□□□ 0.67
HNF4AP41235 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.23■□□□□ 0.67
HNF4AP41235 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.23■□□□□ 0.67
HNF4AP41235 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HNF4AP41235 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.22■□□□□ 0.67
HNF4AP41235 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.22■□□□□ 0.67
HNF4AP41235 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HNF4AP41235 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.22■□□□□ 0.67
HNF4AP41235 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.22■□□□□ 0.67
HNF4AP41235 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.22■□□□□ 0.67
HNF4AP41235 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.22■□□□□ 0.67
HNF4AP41235 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HNF4AP41235 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.22■□□□□ 0.67
HNF4AP41235 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.22■□□□□ 0.67
HNF4AP41235 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
HNF4AP41235 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.22■□□□□ 0.67
HNF4AP41235 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HNF4AP41235 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HNF4AP41235 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.21■□□□□ 0.67
HNF4AP41235 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HNF4AP41235 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HNF4AP41235 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.21■□□□□ 0.67
HNF4AP41235 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HNF4AP41235 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HNF4AP41235 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HNF4AP41235 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HNF4AP41235 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HNF4AP41235 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.21■□□□□ 0.67
HNF4AP41235 AC069152.1-201ENST00000438030 544 ntBASIC19.21■□□□□ 0.67
HNF4AP41235 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.21■□□□□ 0.67
HNF4AP41235 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.21■□□□□ 0.67
HNF4AP41235 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.21■□□□□ 0.67
HNF4AP41235 AC097658.1-201ENST00000475555 843 ntBASIC19.21■□□□□ 0.67
HNF4AP41235 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HNF4AP41235 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.21■□□□□ 0.67
HNF4AP41235 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.21■□□□□ 0.67
HNF4AP41235 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
HNF4AP41235 AC142086.2-201ENST00000569753 217 ntBASIC19.21■□□□□ 0.67
HNF4AP41235 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.21■□□□□ 0.67
HNF4AP41235 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HNF4AP41235 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.21■□□□□ 0.67
HNF4AP41235 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.21■□□□□ 0.67
HNF4AP41235 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.2■□□□□ 0.66
HNF4AP41235 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HNF4AP41235 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HNF4AP41235 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HNF4AP41235 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.2■□□□□ 0.66
HNF4AP41235 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HNF4AP41235 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.2■□□□□ 0.66
HNF4AP41235 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.2■□□□□ 0.66
HNF4AP41235 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.2■□□□□ 0.66
HNF4AP41235 AC133041.1-202ENST00000642053 222 ntBASIC19.2■□□□□ 0.66
HNF4AP41235 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.2■□□□□ 0.66
HNF4AP41235 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.2■□□□□ 0.66
HNF4AP41235 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HNF4AP41235 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.2■□□□□ 0.66
HNF4AP41235 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.2■□□□□ 0.66
HNF4AP41235 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.19■□□□□ 0.66
HNF4AP41235 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HNF4AP41235 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms