Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 GABARAPL3-202ENST00000624044 1851 ntBASIC20.95■□□□□ 0.94
BDNFP23560 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.95■□□□□ 0.94
BDNFP23560 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.95■□□□□ 0.94
BDNFP23560 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.95■□□□□ 0.94
BDNFP23560 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.95■□□□□ 0.94
BDNFP23560 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.95■□□□□ 0.94
BDNFP23560 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.95■□□□□ 0.94
BDNFP23560 AL391422.3-201ENST00000603791 2761 ntBASIC20.95■□□□□ 0.94
BDNFP23560 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BDNFP23560 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
BDNFP23560 AC116351.2-201ENST00000606540 1585 ntBASIC20.94■□□□□ 0.94
BDNFP23560 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.94■□□□□ 0.94
BDNFP23560 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
BDNFP23560 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.94■□□□□ 0.94
BDNFP23560 MIR718-201ENST00000390190 70 ntBASIC20.94■□□□□ 0.94
BDNFP23560 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BDNFP23560 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BDNFP23560 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.94■□□□□ 0.94
BDNFP23560 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.94■□□□□ 0.94
BDNFP23560 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BDNFP23560 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BDNFP23560 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BDNFP23560 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BDNFP23560 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BDNFP23560 AC018553.1-201ENST00000616682 1458 ntBASIC20.94■□□□□ 0.94
BDNFP23560 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
BDNFP23560 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BDNFP23560 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BDNFP23560 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BDNFP23560 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
BDNFP23560 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
BDNFP23560 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BDNFP23560 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
BDNFP23560 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
BDNFP23560 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.93■□□□□ 0.94
BDNFP23560 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.93■□□□□ 0.94
BDNFP23560 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
BDNFP23560 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
BDNFP23560 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
BDNFP23560 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.93■□□□□ 0.94
BDNFP23560 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
BDNFP23560 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.93■□□□□ 0.94
BDNFP23560 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
BDNFP23560 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.93■□□□□ 0.94
BDNFP23560 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.93■□□□□ 0.94
BDNFP23560 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BDNFP23560 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.93■□□□□ 0.94
BDNFP23560 PHGDH-210ENST00000641115 1638 ntBASIC20.93■□□□□ 0.94
BDNFP23560 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BDNFP23560 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
BDNFP23560 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
BDNFP23560 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.92■□□□□ 0.94
BDNFP23560 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
BDNFP23560 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 LINC01006-201ENST00000333319 2292 ntBASIC20.92■□□□□ 0.94
BDNFP23560 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 RPS2P55-201ENST00000397318 883 ntBASIC20.92■□□□□ 0.94
BDNFP23560 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 KRT16P5-201ENST00000455284 522 ntBASIC20.92■□□□□ 0.94
BDNFP23560 AC107956.1-201ENST00000494359 873 ntBASIC20.92■□□□□ 0.94
BDNFP23560 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.92■□□□□ 0.94
BDNFP23560 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.92■□□□□ 0.94
BDNFP23560 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.92■□□□□ 0.94
BDNFP23560 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
BDNFP23560 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BDNFP23560 AL162377.1-201ENST00000618844 1793 ntBASIC20.92■□□□□ 0.94
BDNFP23560 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.92■□□□□ 0.94
BDNFP23560 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
BDNFP23560 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.91■□□□□ 0.94
BDNFP23560 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
BDNFP23560 TFP1-202ENST00000475455 1573 ntBASIC20.91■□□□□ 0.94
BDNFP23560 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.91■□□□□ 0.94
BDNFP23560 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.91■□□□□ 0.94
BDNFP23560 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.91■□□□□ 0.94
BDNFP23560 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
BDNFP23560 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms