Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC112907.2-201ENST00000448639 330 ntBASIC20.88■□□□□ 0.93
COL6A3P12111 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.88■□□□□ 0.93
COL6A3P12111 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A3P12111 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A3P12111 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A3P12111 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A3P12111 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A3P12111 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.88■□□□□ 0.93
COL6A3P12111 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A3P12111 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.87■□□□□ 0.93
COL6A3P12111 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
COL6A3P12111 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
COL6A3P12111 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
COL6A3P12111 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.87■□□□□ 0.93
COL6A3P12111 AC055717.3-201ENST00000622967 595 ntBASIC20.87■□□□□ 0.93
COL6A3P12111 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
COL6A3P12111 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL6A3P12111 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.87■□□□□ 0.93
COL6A3P12111 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.87■□□□□ 0.93
COL6A3P12111 MIR3197-201ENST00000582241 73 ntBASIC20.87■□□□□ 0.93
COL6A3P12111 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.87■□□□□ 0.93
COL6A3P12111 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.87■□□□□ 0.93
COL6A3P12111 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL6A3P12111 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A3P12111 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
COL6A3P12111 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.87■□□□□ 0.93
COL6A3P12111 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL6A3P12111 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.86■□□□□ 0.93
COL6A3P12111 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A3P12111 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A3P12111 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A3P12111 BX842568.4-201ENST00000421222 227 ntBASIC20.86■□□□□ 0.93
COL6A3P12111 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
COL6A3P12111 KRT18P58-201ENST00000527480 1120 ntBASIC20.86■□□□□ 0.93
COL6A3P12111 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.86■□□□□ 0.93
COL6A3P12111 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.86■□□□□ 0.93
COL6A3P12111 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A3P12111 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A3P12111 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A3P12111 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.86■□□□□ 0.93
COL6A3P12111 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A3P12111 TSPY19P-201ENST00000418461 509 ntBASIC20.85■□□□□ 0.93
COL6A3P12111 TSPY18P-201ENST00000441642 509 ntBASIC20.85■□□□□ 0.93
COL6A3P12111 HLA-J-203ENST00000494367 1087 ntBASIC20.85■□□□□ 0.93
COL6A3P12111 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A3P12111 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.85■□□□□ 0.93
COL6A3P12111 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 SPDYE15P-201ENST00000424157 909 ntBASIC20.85■□□□□ 0.93
COL6A3P12111 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A3P12111 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A3P12111 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A3P12111 AC008040.2-201ENST00000461049 708 ntBASIC20.85■□□□□ 0.93
COL6A3P12111 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
COL6A3P12111 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A3P12111 AC140113.3-201ENST00000605663 199 ntBASIC20.85■□□□□ 0.93
COL6A3P12111 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.84■□□□□ 0.93
COL6A3P12111 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A3P12111 AC023632.3-201ENST00000521633 145 ntBASIC20.84■□□□□ 0.93
COL6A3P12111 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.84■□□□□ 0.93
COL6A3P12111 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A3P12111 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A3P12111 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A3P12111 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.84■□□□□ 0.93
COL6A3P12111 HLA-G-203ENST00000376818 1127 ntBASIC20.84■□□□□ 0.93
COL6A3P12111 TSPY17P-201ENST00000450329 467 ntBASIC20.84■□□□□ 0.93
COL6A3P12111 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.84■□□□□ 0.93
COL6A3P12111 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
COL6A3P12111 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.84■□□□□ 0.93
COL6A3P12111 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A3P12111 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL6A3P12111 LINC01311-201ENST00000565162 1445 ntBASIC20.84■□□□□ 0.93
COL6A3P12111 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.84■□□□□ 0.93
COL6A3P12111 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A3P12111 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A3P12111 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A3P12111 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A3P12111 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.83■□□□□ 0.93
COL6A3P12111 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.83■□□□□ 0.93
COL6A3P12111 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.83■□□□□ 0.93
COL6A3P12111 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A3P12111 RCC2P6-201ENST00000526625 1557 ntBASIC20.83■□□□□ 0.93
COL6A3P12111 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL6A3P12111 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms